YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114536608, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGITTNAPAL DKAPDAHGSH GEGGEAHATL SGYLTGFGLS VVLTAVPFWL VMARPIEDGV  60
   61 TTALLVVSLA VAQIFVHMIY FLHMDAKSEG GWTIMALIFT AVLVIITISG SLWVMFHLNR 120
  121 NMMPMGDMQM EEPAERAPIN QLAPIGGGED DEMPEAPMPP PLPENGSAED AAGAPASEPN 180
  181 IQNMEPAAES ALEPQASASQ RPQAPGSGSS EPATQPEGSA NGN

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.89
Transmembrane Helix	30	51	0.93
Cytoplasmic	52	59	0.80
Transmembrane Helix	60	81	0.93
Non-Cytoplasmic	82	92	0.78
Transmembrane Helix	93	116	0.92
Cytoplasmic	117	223	0.92