YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114538120, gi...
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEPTRKPSD DGLGQTIGER GAVKNRESSL INEAHGETSK PVNRDPNPSK KTEKGGFGET  60
   61 VKVVIQALIL ALLIRTLFFQ PFSIPSGSMM PTLLIGDYLF VSKWSYGYSR YSAPLSLPIF 120
  121 EGRILPGEPE RGDIVVFRKP GEEDTDYIKR LIGLPGDRIQ MREGALFING EAVLREPAGT 180
  181 FVGEDGEEID QFRETLPNGE SYMTLDLGPN LGGDDTREFV VPDGHYFMMG DNRDNSLDSR 240
  241 FDVGYVPFEN LVGKAQIIFF SIGGGASPLE LWEWPSEIRV SRIFDWLG

Type	Start	End	Confidence
Cytoplasmic	1	59	0.68
Transmembrane Helix	60	79	0.58
Non-Cytoplasmic	80	288	0.73