YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114538281, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRDRSVLDG LSESMHSIGE RLTDLEHDLA ARLDPRPSRT ERARRALVRA NPFHHEPSFS  60
   61 ERYLPDFMTG WYSPTRAEAR RQVRALRDAS EHGYDSARGS LAAFYDGLPD LRLPRTKSFK 120
  121 RGMQSQRGID KIRTSMSERD KELTLLLVAG GTLAAIGAAY YVTKKVQEHA EEPSYEVVRE 180
  181 DGVVEIRDYD SMIVAETVKS GYHEKARRAG FETLYDYIAA KNRGGKSIKM TTPVLQQLAD 240
  241 SEGKTKGWAV RFVMPKKHTM ATLPQPEQRD VILKEVPARR TVAIRFSGNF NATLASKQLM 300
  301 TLYNYLADNN LTQKGDPEYA FYNPPWTPGF MKRNEILIEV ER

Type	Start	End	Confidence
Cytoplasmic	1	142	0.65
Transmembrane Helix	143	162	0.67
Non-Cytoplasmic	163	342	0.97