YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114707991, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	35	0.99
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	275	0.99
Transmembrane Helix	276	299	0.89
Cytoplasmic	300	305	0.67
Transmembrane Helix	306	325	0.78
Non-Cytoplasmic	326	331	0.79
Transmembrane Helix	332	354	0.92
Cytoplasmic	355	362	0.77
Transmembrane Helix	363	385	0.73
Non-Cytoplasmic	386	417	0.83
Transmembrane Helix	418	440	0.91
Cytoplasmic	441	460	0.86
Transmembrane Helix	461	483	0.91
Non-Cytoplasmic	484	497	0.79
Transmembrane Helix	498	521	0.82
Cytoplasmic	522	531	0.62
Transmembrane Helix	532	551	0.91
Non-Cytoplasmic	552	568	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVSLAACSF ASFLRTFATF FTLLILSFTT LPATAQDAAA PADASAVESA EAATQDPAAI  60
   61 VQSFGGKQSY DDTEEVISRL AATGDPAVAR ALRALREGDL YWRESDEAVF IAARDGDNYA 120
  121 LTDPYTGEEA GTAPRGDMSK VRVKNSIRNA VTGALGSLTL RSDNPGQRMR AANTLFDEAN 180
  181 PDMIEPLEAA IEAEEDASIR TAMEQARAAA ILQSDRPEEE KAEVTSVLAQ RGDRQAQTYL 240
  241 NAFAASTEDD AARVAATSAV AQIQSNINFW NQAQNVWYGL SLGSVLLLAA IGLAITFGVM 300
  301 GVINMAHGEM VMLGAYTTFV VQELIRNHAP ELFAWSLAIA LPLAFLVSGL VGLGMERGLI 360
  361 RFLYGRPLET LLATFGVSLI LQQAVRTIFG PTNREVGNPD WMSGAFEVGL MSVTWNRLWI 420
  421 IVFALVVFAG LLLVLNKTVL GLQMRAVTQN RQMASAMGIR TPWVDAMTFA LGSGIAGIAG 480
  481 VALSQIDNVS PNLGQGYIID SFMVVVFGGV GNLWGTLVGA MSLGVINKFL EPYAGAVLGK 540
  541 IVVLVIIILF IQKRPRGLFA QKGRFVDA