YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114332649, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	43	0.89
Non-Cytoplasmic	44	73	0.95
Transmembrane Helix	74	97	0.89
Cytoplasmic	98	117	0.91
Transmembrane Helix	118	139	0.90
Non-Cytoplasmic	140	150	0.79
Transmembrane Helix	151	171	0.96
Cytoplasmic	172	179	0.88
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	213	0.80
Transmembrane Helix	214	233	0.96
Cytoplasmic	234	268	0.94
Transmembrane Helix	269	291	0.88
Non-Cytoplasmic	292	312	0.94
Transmembrane Helix	313	334	0.92
Cytoplasmic	335	369	0.94
Transmembrane Helix	370	390	0.92
Non-Cytoplasmic	391	395	0.78
Transmembrane Helix	396	415	0.92
Cytoplasmic	416	446	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKPGLDLKS AKGGLSELKT RLLFVIGAII VFRAGSFVPI PGIDAAVLAE LFAQQKDTIL  60
   61 GMFNMFSGGA LERASIFALG IMPYISASII MQLLTVVHPA LAELKKEGES GRKKISQYTR 120
  121 YGTLVLGTLQ SVGIATGLPN LMPGLVANPG FGFYFVAVVS LVTGTMFLMW LGEQITERGI 180
  181 GNGISILIFA GIVAGLPSAI GSTAEQARQG DMNVLVLLLL AVIVFAVTYL VVFVERGQRR 240
  241 IVVNYAKRQQ GRKVFAAQST HLPLKINMAG VIPPIFASSI ILFPGTLAQW FGSNESMSWL 300
  301 SDFALAVSPG QPLYSLLYAT AIIFFCFFYT ALVFNPRETA DNLKKSGAFI PGIRPGEQTS 360
  361 RYIDKVMTRL TLAGALYITF ICLIPEFMLI AWKVQFYFGG TSLLIIVVVI MDFMAQVQTH 420
  421 MMSHQYESVM KKANLVNKAN LDRFGK