YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114315555, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEIKTSCSA LSPTPQEGDP VFSIVVPCYN EQDGLEMFHT RLASVMDGMG ESWEVVYVND  60
   61 GSRDRTLDVM QTLRRADPRI SVVGLSRNFG KEIATTAGLD HARGQAVIVT DADLQDPPEL 120
  121 IPELVAQWRQ GFDMVYAQRR VREGETWLKK ATANAFYNLM TRLGDVSLPP NAGDFRLMSR 180
  181 RAVDALLRLR EQHRFMKGLF AWIGYPSVAV QYDRAPRAVG ESKWSYWKLW NLALEGITGF 240
  241 TVVPLKLATY LGILVALFAV LYGGNIVLSK LFFGNPVPGY PSLMAVVLFL GGVQLMTLGV 300
  301 IGEYLGRVFN ETKRRPLYFV ERHLPSDPSM TPPYVGDSVR G

Type	Start	End	Confidence
Cytoplasmic	1	246	0.86
Transmembrane Helix	247	268	0.82
Non-Cytoplasmic	269	282	0.69
Transmembrane Helix	283	305	0.90
Cytoplasmic	306	341	0.85