YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCA2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	174	0.98
Transmembrane Helix	175	197	0.93
Non-Cytoplasmic	198	325	0.92
Transmembrane Helix	326	346	0.85
Cytoplasmic	347	353	0.70
Transmembrane Helix	354	371	0.93
Non-Cytoplasmic	372	387	0.80
Transmembrane Helix	388	410	0.89
Cytoplasmic	411	421	0.83
Transmembrane Helix	422	440	0.97
Non-Cytoplasmic	441	509	0.94
Transmembrane Helix	510	532	0.90
Cytoplasmic	533	620	0.99
Transmembrane Helix	621	639	0.96
Non-Cytoplasmic	640	649	0.60
Transmembrane Helix	650	668	0.87
Cytoplasmic	669	678	0.78
Transmembrane Helix	679	701	0.88
Non-Cytoplasmic	702	720	0.85
Transmembrane Helix	721	744	0.76
Cytoplasmic	745	767	0.62
Transmembrane Helix	768	794	0.75
Non-Cytoplasmic	795	811	0.59
Transmembrane Helix	812	835	0.90
Cytoplasmic	836	838	0.56

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHLEGRDGRR YPGAPAVELL QTSVPSGLAE LVAGKRRLPR GAGGADPSHS CPRGAAGQSS  60
   61 WAPAGQEFAS FLTKGRSHSS LPQMSSSRSK DSCFTENTPL LRNSLQEKGS RCIPVYHPEF 120
  121 ITAEESWEDS SADWERRYLL SREVSGLSAS ASSEKGDLLD SPHIRLRLSK LRRCVQWLKV 180
  181 MGLFAFVVLC SILFSLYPDQ GKLWQLLALS PLENYSVNLS SHVDSTLLQV DLAGALVASG 240
  241 PSRPGREEHI VVELTQDDAL GSRWRRPQQV THNWTVYLNP RRSEHSVMSR TFEVLTRETV 300
  301 SISIRASLQQ TQAVPLLMAH QYLRGSVETQ VTIATAILAG VYALIIFEIV HRTLAAMLGS 360
  361 LAALAALAVI GDRPSLTHVV EWIDFETLAL LFGMMILVAI FSETGFFDYC AVKAYRLSRG 420
  421 RVWAMIIMLC LIAAVLSAFL DNVTTMLLFT PVTIRLCEVL NLDPRQVLIA EVIFTNIGGA 480
  481 ATAIGDPPNV IIVSNQELRK MGLDFAGFTA HMFIGICLVL LVCFPLLRLL YWNRKLYNKE 540
  541 PSEIVELKHE IHVWRLTAQR ISPASREETA VRRLLLGKVL ALEHLLARRL HTFHRQISQE 600
  601 DKNWETNIQE LQKKHRISDG ILLAKCLTVL GFVIFMFFLN SFVPGIHLDL GWIAILGAIW 660
  661 LLILADIHDF EIILHRVEWA TLLFFAALFV LMEALAHLHL IEYVGEQTAL LIKMVPEEQR 720
  721 LIAAIVLVVW VSALASSLID NIPFTATMIP VLLNLSHDPE VGLPAPPLMY ALAFGACLGG 780
  781 NGTLIGASAN VVCAGIAEQH GYGFSFMEFF RLGFPMMVVS CTVGMCYLLV AHVVVGWN