YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114327238, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	26	0.97
Transmembrane Helix	27	48	0.83
Non-Cytoplasmic	49	79	0.81
Transmembrane Helix	80	103	0.77
Cytoplasmic	104	122	0.93
Transmembrane Helix	123	143	0.90
Non-Cytoplasmic	144	158	0.87
Transmembrane Helix	159	179	0.96
Cytoplasmic	180	186	0.89
Transmembrane Helix	187	208	0.91
Non-Cytoplasmic	209	218	0.89
Transmembrane Helix	219	241	0.91
Cytoplasmic	242	277	0.95
Transmembrane Helix	278	298	0.93
Non-Cytoplasmic	299	318	0.90
Transmembrane Helix	319	341	0.88
Cytoplasmic	342	373	0.96
Transmembrane Helix	374	396	0.85
Non-Cytoplasmic	397	402	0.71
Transmembrane Helix	403	429	0.68
Cytoplasmic	430	447	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAAEQLAS NFNLSTFSKA TELKKRIWFT LAALIVYRIG TYVPVPGVDA SVIGDMFNQQ  60
   61 GGGILGMFDM FSGGALSRMT VFALNIMPYI SASIIVQLLT AAVPSLEALK KEGESGRRKM 120
  121 NEYTRYLTVL IALLQSYGIA AGLEGMQGPH GAAVIDPGWF FRLSCVVTLV GGTMFLMWLG 180
  181 EQITARGVGN GISLIIFAGI VANLPHALGN LLQMSRNNAL SLPSLLAVMV IAVAVIAFVV 240
  241 FMERAQRRVV VQYPKRQVGN RMFGGDSTHM PLKVNTANVI PPIFASSLLL IPATIAGFSK 300
  301 NSGNSWLSWL SGQLGHGQPI YMLLYAGLII FFSYFYTAVV FNPQETADNL KKNGGFIPGI 360
  361 RPGKATADYF DRILTRLTTV GAIYLVIVCL LPEFLISKFG VPFYFGGTSL MIVVSVTMDT 420
  421 VTQVQSHLLA HQYEGLIRRA RTKGKGR