YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FOXA1
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGTVKMEGH ETSDWNSYYA DTQEAYSSVP VSNMNSGLGS MNSMNTYMTM NTMTTSGNMT  60
   61 PASFNMSYAN PALGAGLSPG AVAGMPGGSA GAMNSMTAAG VTAMGTALSP SGMGAMGAQQ 120
  121 AASMMNGLGP YAAAMNPCMS PMAYAPSNLG RSRAGGGGDA KTFKRSYPHA KPPYSYISLI 180
  181 TMAIQRAPSK MLTLSEIYQW IMDLFPYYRQ NQQRWQNSIR HSLSFNDCFV KVARSPDKPG 240
  241 KGSYWTLHPD SGNMFENGCY LRRQKRFKCE KQPGAGGGGG SGSGGSGAKG GPESRKDPSG 300
  301 ASNPSADSPL HRGVHGKTGQ LEGAPAPGPA ASPQTLDHSG ATATGGASEL KTPASSTAPP 360
  361 ISSGPGALAS VPASHPAHGL APHESQLHLK GDPHYSFNHP FSINNLMSSS EQQHKLDFKA 420
  421 YEQALQYSPY GSTLPASLPL GSASVTTRSP IEPSALEPAY YQGVYSRPVL NTS

Type	Start	End	Confidence
Cytoplasmic	1	67	0.65
Transmembrane Helix	68	85	0.56
Non-Cytoplasmic	86	95	0.51
Transmembrane Helix	96	117	0.64
Cytoplasmic	118	126	0.45
Transmembrane Helix	127	145	0.44
Non-Cytoplasmic	146	473	0.67