YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|114055048
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALVFSVLLL LGLCGKMASG GQPAFDNTPE ALNYELPTTE YETQDTFNAG IIDPLYQMVH  60
   61 IFLNVVQPND FPQDLVKKLI QKRFDISVDT KEPENIVLAL KVAIYEIGVL ICVILGLLFI 120
  121 FLMPLVGFFF CMCRCCNKCG GEMHQRQKQN ESCRRKCLAI SLLLICLLMS LGIAFGFVAN 180
  181 QQTRTRIQRT QKLAESNYRD LRALLTEAPK QIDYILGQYN TTKNKAFSDL DSIDSVLGGR 240
  241 IKGQLKPKVT PVLEENXGHG QQPLD

Type	Start	End	Confidence
Signal Peptide	1	20	0.98
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	106	0.97
Transmembrane Helix	107	136	0.82
Cytoplasmic	137	156	0.96
Transmembrane Helix	157	179	0.95
Non-Cytoplasmic	180	265	0.99