YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPAP2B
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNYKYDKAI VPESKNGGSP ALNNNPRRSG SKRVLLICLD LFCLFMAGLP FLIIETSTIK  60
   61 PYHRGFYCND ESIKYPLKTG ETINDAVLCA VGIVIAILAI ITGEFYRIYY LKKSRSTIQN 120
  121 PYVAALYKQV GCFLFGCAIS QSFTDIAKVS IGRLRPHFLS VCNPDFSQIN CSEGYIQNYR 180
  181 CRGDDSKVQE ARKSFFSGHA SFSMYTMLYL VLYLQARFTW RGARLLRPLL QFTLIMMAFY 240
  241 TGLSRVSDHK HHPSDVLAGF AQGALVACCI VFFVSDLFKT KTTLSLPAPA IRKEILSPVD 300
  301 IIDRNNHHNM M

Type	Start	End	Confidence
Cytoplasmic	1	33	0.99
Transmembrane Helix	34	54	0.94
Non-Cytoplasmic	55	85	0.93
Transmembrane Helix	86	108	0.90
Cytoplasmic	109	124	0.90
Transmembrane Helix	125	144	0.55
Non-Cytoplasmic	145	194	0.58
Transmembrane Helix	195	216	0.72
Cytoplasmic	217	224	0.66
Transmembrane Helix	225	244	0.88
Non-Cytoplasmic	245	255	0.67
Transmembrane Helix	256	278	0.87
Cytoplasmic	279	311	0.78