YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PPAP2A
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDKTRLPYV ALDVLCVLLA GLPFAILTSR HTPFQRGVFC NDESIKYPYK EDTIPYALLG  60
   61 GIIIPFSIIV IILGETLSVY CNLLHSNSFI RNNYIATIYK AIGTFLFGAA ASQSLTDIAK 120
  121 YSIGRLRPHF LDVCDPDWSK INCSDGYIEY YICRGNAERV KEGRLSFYSG HSSFSMYCML 180
  181 FVALYLQARM KGDWARLLRP TLQFGLVAVS IYVGLSRVSD YKHHWSDVLT GLIQGALVAI 240
  241 LVAVYVSDFF KERTSFKERK EEDSHTTLHE TPTTGNHYPS NHQP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.86
Transmembrane Helix	9	28	0.95
Non-Cytoplasmic	29	56	0.90
Transmembrane Helix	57	81	0.83
Cytoplasmic	82	95	0.75
Transmembrane Helix	96	115	0.82
Non-Cytoplasmic	116	166	0.86
Transmembrane Helix	167	188	0.85
Cytoplasmic	189	196	0.83
Transmembrane Helix	197	216	0.88
Non-Cytoplasmic	217	227	0.76
Transmembrane Helix	228	250	0.88
Cytoplasmic	251	284	0.94