YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AMFR
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLLFLERFP WPSLRTYTGL SGLALLGTII SAYRALSQPE AGPGEPDQLT ASLQPEPPAP  60
   61 ARPSAGGPRA RDVAQYLLSD SLFVWVLVNT ACCVLMLVAK LIQCIVFGPL RVSERQHLKD 120
  121 KFWNFIFYKF IFIFGVLNVQ TVEEVVMWCL WFAGLVFLHL MVQLCKDRFE YLSFSPTTPM 180
  181 SSHGRVLSLL VAMLLSCCGL AAVCSITGYT HGMHTLAFMA AESLLVTVRT AHVILRYVIH 240
  241 LWDLNHEGTW EGKGTYVYYT DFVMELTLLS LDLMHHIHML LFGNIWLSMA SLVIFMQLRY 300
  301 LFHEVQRRIR RHKNYLRVVG NMEARFAVAT PEELAVNNDD CAICWDSMQA ARKLPCGHLF 360
  361 HNSCLRSWLE QDTSCPTCRM SLNIADNNRV REEHQGENLD ENLVPVAAAE GRPRLNQHNH 420
  421 FFHFDGSRIA SWLPSFSVEV MHTTNILGIT QASNSQLNAM AHQIQEMFPQ VPYHLVLQDL 480
  481 QLTRSVEITT DNILEGRIQV PFPTQRSDSI RPALNSPVER PSSDQEEGET SAQTERVPLD 540
  541 LSPRLEETLD FGEVEVEPSE VEDFEARGSR FSKSADERQR MLVQRKDELL QQARKRFLNK 600
  601 SSEDDAASES FLPSEGASSD PVTLRRRMLA AAAERRLQKQ QTS

Type	Start	End	Confidence
Cytoplasmic	1	15	0.88
Transmembrane Helix	16	36	0.91
Non-Cytoplasmic	37	81	0.98
Transmembrane Helix	82	104	0.90
Cytoplasmic	105	121	0.89
Transmembrane Helix	122	141	0.88
Non-Cytoplasmic	142	146	0.76
Transmembrane Helix	147	165	0.91
Cytoplasmic	166	185	0.89
Transmembrane Helix	186	209	0.92
Non-Cytoplasmic	210	279	0.50
Transmembrane Helix	280	302	0.89
Cytoplasmic	303	643	0.67