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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7705322, gi|6...
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.45
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRGFLARPFL STNQHLAQWG SPLPQGKGLV QLPSQHTRHS RPFHELCSKE ENSATVPKLI  60
   61 SLVVSSETID FSNKTMDSRR DWEREKRILE GKLQLPKALA RTQRARDEGR AWTSRWLQRR 120
  121 RSPESCEAPL SAPLWGPQRG LPGREPLRSR SASAIALRTI GHILALLLRL LHLGLGSGGC 180
  181 REDVPPSGRG KKEEKMKKHR RALALVSCLF LCSLVWLPSW RVCCKESSSA SASSYYSQDD 240
  241 NCALENEDVQ FQKKNTESKK LSPPVVETLP TVDLHEESSN AVVDSETVEN ISSSSTSEIT 300
  301 PISKLDEIEK SGTIPIAKPS ETEQSETDCD VGEALDASAP IEQPSFVSPP DSLVGQHIEN 360
  361 VSSSHGKGKI TKSEFESKVS ASEQGGGDPK SALNASDNLK NESSDYTKPG DIDPTSVASP 420
  421 KDPEDIPTFD EWKKKVMEVE KEKSQSMHAS SNGGSHATKK VQKNRNNYAS VECGAKILAA 480
  481 NPEAKSTSAI LIENMDLYML NPCSTKIWFV IELCEPIQVK QLDIANYELF SSTPKDFLVS 540
  541 ISDRYPTNKW IKLGTFHGRD ERNVQSFPLD EQMYAKYVKV ELLSHFGSEH FCPLSLIRVF 600
  601 GTNMVEEYEE IADSQYHSER QELFDEDYDY PLDYNTGEDK SSKNLLGSAT NAILNMVNIA 660
  661 ANILGAKTED LTEGNKSISE NATATAAPKM PESTPVSTPV PSPEYVTTEV HTHDMEPSTP 720
  721 DTPKESPIVQ LVQEEEEEAS PSTVTLLGSG EQEDESSPWF ESETQIFCSE LTTICCISSF 780
  781 SEYIYKWCSV RVALYRQRSR TALSKGKDYL VLAQPPLLLP AESVDVSVLQ PLSGELENTN 840
  841 IEREAETVVL GDLSSSMHQD DLVNHTVDAV ELEPSHSQTL SQSLLLDITP EINPLPKIEV 900
  901 SESVEYEAGH IPSPVIPQES SVEIDNETEQ KSESFSSIEK PSITYETNKV NELMDNIIKE 960
  961 DMNSMQIFTK LSETIVPPIN TATVPDNEDG EAKMNIADTA KQTLISVVDS SSLPEVKEEE1020
 1021 QSPEDALLRG LQRTATDFYA ELQNSTDLGY ANGNLVHGSN QKESVFMRLN NRIKALEVNM1080
 1081 SLSGRYLEEL SQRYRKQMEE MQKAFNKTIV KLQNTSRIAE EQDQRQTEAI QLLQAQLTNM1140
 1141 TQLVSNLSAT VAELKREVSD RQSYLVISLV LCVVLGLMLC MQRCRNTSQF DGDYISKLPK1200
 1201 SNQYPSPKRC FSSYDDMNLK RRTSFPLMRS KSLQLTGKEV DPNDLYIVEP LKFSPEKKKK1260
 1261 RCKYKIEKIE TIKPEEPLHP IANGDIKGRK PFTNQRDFSN MGEVYHSSYK GPPSEGSSET1320
 1321 SSQSEESYFC GISACTSLCN GQSQKTKTEK RALKRRRSKV QDQGKLIKTL IQTKSGSLPS1380
 1381 LHDIIKGNKE ITVGTFGVTA VSGHI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle