YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23503311, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGVGDAAAP GEGGGGGVDG PQRDGRGEAD QPGGSGGQGP PPAPQLTETL GFYESDRRRE  60
   61 RRRGRTELSL LRFLSAELTR GYFLEHNEAK YTERRERVYT CLRIPRELEK LMVFGIFLCL 120
  121 DAFLYVFTLL PLRVFLALFR LLTLPCYGLR DRRLLQPAQV CDILKGVILV ICYFMMHYVD 180
  181 YSMMYHLIRG QSVIKLYIIY NMLEVADRLF SSFGQDILDA LYWTATEPKE RKRAHIGVIP 240
  241 HFFMAVLYVF LHAILIMVQA TTLNVAFNSH NKSLLTIMMS NNFVEIKGSV FKKFEKNNLF 300
  301 QMSNSDIKER FTNYVLLLIV CLRNMEQFSW NPDHLWVLFP DVCMVIASEI AVDIVKHAFI 360
  361 TKFNDITADV YSEYRASLAF DLVSSRQKNA YTDYSDSVAR RMGFIPLPLA VLLIRVVTSS 420
  421 IKVQGILSYA CVILFYFGLI SLKVLNSIVL LGKSCQYVKE AKMEEKLSNP PATCTPGKPS 480
  481 SKSQNKCKPS QGLSTEENLS ASITKQPIHQ KENIIPLLVT SNSDQFLTTP DGDEKDITQD 540
  541 NSELKHRSSK SVLLCQSGLP EC

Type	Start	End	Confidence
Cytoplasmic	1	110	0.85
Transmembrane Helix	111	135	0.83
Non-Cytoplasmic	136	160	0.65
Transmembrane Helix	161	181	0.76
Cytoplasmic	182	237	0.67
Transmembrane Helix	238	260	0.83
Non-Cytoplasmic	261	336	0.62
Transmembrane Helix	337	352	0.43
Cytoplasmic	353	401	0.68
Transmembrane Helix	402	418	0.59
Non-Cytoplasmic	419	424	0.55
Transmembrane Helix	425	445	0.75
Cytoplasmic	446	562	0.62