YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113197605, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGVSALLAR CPTAGLAGGL GVTACAAAGV LLYRIARRMK PTHTMVNCWF CNQDTLVPYG  60
   61 NRNCWDCPHC EQYNGFQENG DYNKPIPAQY LEHLNHVVSS APSLRDPSQP QQWVSSQVLL 120
  121 CKRCNHHQTT KIKQLAAFAP REEGRYDEEV EVYRHHLEQM YKLCRPCQAA VEYYIKHQNR 180
  181 QLRALLLSHQ FKRREADQTH AQNFSSAVKS PVQVILLRAL AFLACAFLLT TALYGASGHF 240
  241 APGTTVPLAL PPGGNGSATP DNGTTPGAEG WRQLLGLLPE HMAEKLCEAW AFGQSHQTGV 300
  301 VALGLLTCLL AMLLAGRIRL RRIDAFCTCL WALLLGLHLA EQHLQAASPS WLDTLKFSTT 360
  361 SLCCLVGFTA AVATRKATGP RRFRPRRSEK QP

Type	Start	End	Confidence
Non-Cytoplasmic	1	12	0.92
Transmembrane Helix	13	35	0.90
Cytoplasmic	36	213	0.99
Transmembrane Helix	214	236	0.89
Non-Cytoplasmic	237	297	0.95
Transmembrane Helix	298	316	0.94
Cytoplasmic	317	324	0.75
Transmembrane Helix	325	344	0.88
Non-Cytoplasmic	345	356	0.79
Transmembrane Helix	357	377	0.91
Cytoplasmic	378	392	0.96