YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5410355
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGETESPG PKKCGPYISS VTSQSVNLMI RGVVLFFIGV FLALVLNLLQ IQRNVTLFPP  60
   61 DVIASIFSSA WWVPPCCGTA SAVIGLLYPC IDRHLGEPHK FKREWSSVMR CVAVFVGINH 120
  121 ASAKVDFDNN IQLSLTLAAL SIGLWWTFDR SRSGFGLGVG IAFLATVVTQ LLVYNGVYQY 180
  181 TSPDFLYVRS WLPCIFFAGG ITMGNIGRQL AMYECKVIAE NLIRNEEGKK YLLYRKAR

Type	Start	End	Confidence
Cytoplasmic	1	27	0.98
Transmembrane Helix	28	51	0.87
Non-Cytoplasmic	52	69	0.89
Transmembrane Helix	70	91	0.92
Cytoplasmic	92	105	0.92
Transmembrane Helix	106	123	0.91
Non-Cytoplasmic	124	130	0.79
Transmembrane Helix	131	148	0.93
Cytoplasmic	149	154	0.87
Transmembrane Helix	155	174	0.95
Non-Cytoplasmic	175	186	0.78
Transmembrane Helix	187	207	0.90
Cytoplasmic	208	238	0.95