YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NINJ1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSGTEEYEL NGGLPPGTPG SPDASPARWG WRHGPINVNH YASKKSAAES MLDIALLMAN  60
   61 ASQLKAVVEQ GPSFAFYVPL VVLISISLVL QIGVGVLLIF LVKYDLNNPD KHAKLDFLNN 120
  121 LATGLVFIIV VVNIFITAFG VQKPLMDMAP QQ

Type	Start	End	Confidence
Cytoplasmic	1	74	0.57
Transmembrane Helix	75	102	0.83
Non-Cytoplasmic	103	116	0.43
Transmembrane Helix	117	141	0.85
Cytoplasmic	142	152	0.41