YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CDS1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLELRHRGSC PGPREAVSPP HREGEAAGGD HETESTSDKE TDIDDRYGDL DSRTDSDIPE  60
   61 IPPSSDRTPE ILKKALSGLS SRWKNWWIRG ILTLTMISLF FLIIYMGSFM LMLLVLGIQV 120
  121 KCFHEIITIG YRVYHSYDLP WFRTLSWYFL LCVNYFFYGE TVADYFATFV QREEQLQFLI 180
  181 RYHRFISFAL YLAGFCMFVL SLVKKHYRLQ FYMFAWTHVT LLITVTQSHL VIQNLFEGMI 240
  241 WFLVPISSVI CNDITAYLFG FFFGRTPLIK LSPKKTWEGF IGGFFSTVVF GFIAAYVLSK 300
  301 YQYFVCPVEY RSDVNSFVTE CEPSELFQLQ TYSLPPFLKA VLRQERVSLY PFQIHSIALS 360
  361 TFASLIGPFG GFFASGFKRA FKIKDFANTI PGHGGIMDRF DCQYLMATFV HVYITSFIRG 420
  421 PNPSKVLQQL LVLQPEQQLN IYKTLKTHLI EKGILQPTLK V

Type	Start	End	Confidence
Cytoplasmic	1	85	0.93
Transmembrane Helix	86	106	0.90
Non-Cytoplasmic	107	110	0.59
Transmembrane Helix	111	134	0.63
Cytoplasmic	135	143	0.57
Transmembrane Helix	144	159	0.80
Non-Cytoplasmic	160	181	0.78
Transmembrane Helix	182	203	0.89
Cytoplasmic	204	211	0.79
Transmembrane Helix	212	232	0.86
Non-Cytoplasmic	233	239	0.85
Transmembrane Helix	240	263	0.90
Cytoplasmic	264	276	0.90
Transmembrane Helix	277	298	0.91
Non-Cytoplasmic	299	353	0.97
Transmembrane Helix	354	377	0.86
Cytoplasmic	378	461	0.88