YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4127986
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWGTLHTFI GGVNKHSTSI GKVWITVIFI FRVMILVVAA QEVWGDEQED FVCNTLQPGC  60
   61 KNVCYDHFFP VSHIRLWALQ LIFVSTPALL VAMHVAYYRH ETTRKFRRGE KRNDFKDIED 120
  121 IKKHKVRIEG SLWWTYTSSI FFRIIFEAAF MYVFYFLYNG YHLPWVLKCG IDPCPNLVDC 180
  181 FISRPTEKTV FTIFMISASV ICMLLNVAEL CYLLLKVCFR RSKRAQTQKN HPNHALKESK 240
  241 QNEMNELISD SGQNAITGFP S

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	75	0.96
Transmembrane Helix	76	98	0.95
Cytoplasmic	99	131	0.99
Transmembrane Helix	132	156	0.89
Non-Cytoplasmic	157	190	0.97
Transmembrane Helix	191	215	0.90
Cytoplasmic	216	261	0.98