YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SYNGR1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWLFSIVVF GSIVNEGYLN SASEGEEFCI  60
   61 YNRNPNACSY GVAVGVLAFL TCLLYLALDV YFPQISSVKD RKKAVLSDIG VSAFWAFLWF 120
  121 VGFCYLANQW QVSKPKDNPL NEGTDAARAA IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL 180
  181 FSQDYMDPSQ DSSMPYAPYV EPNTGPDPAG MGGTYQQPAN TFDTEPQGYQ SQGY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.94
Transmembrane Helix	27	49	0.82
Non-Cytoplasmic	50	69	0.88
Transmembrane Helix	70	92	0.88
Cytoplasmic	93	103	0.93
Transmembrane Helix	104	127	0.85
Non-Cytoplasmic	128	145	0.91
Transmembrane Helix	146	168	0.85
Cytoplasmic	169	234	0.93