YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88954789, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPAVPASA PPATPAPVPA AVPASAPASV PAPTPAPAAA PVPAAAPASS SDPAAASATT  60
   61 AAPGQTPASA QAPAQTPAPA LPGPALPGPF PGGRVVRLHP VILASIVDSY ERRNEGAARV 120
  121 IGTLLGTVDK HSVEVTNCFS VPHNESEDEV AVDMEFAKNM YELHKKVSPN ELILGWYATG 180
  181 HDITEHSVLI HEYYSREAPN PIHLTVDTSL QNGRMSIKAY VSTLMGVPGR TMGVMFTPLT 240
  241 VKYAYYDTER IGVELIMKTC FSPNRVIGLL SDLQQVGGAS ARIQDALSTV LQYAEDVLSG 300
  301 KVSADNTVGR FLMSLVNRVP KIVPDDFETM LNSNINDLLM VTYLANLTQS QIALNEKLVN 360
  361 L

Type	Start	End	Confidence
Signal Peptide	1	20	0.86
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	361	0.98