YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|4589544
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRKRRRQAAV TQAATRASGT PSPRDGTMTQ GKLSVANKAP GTEGQQQVHG EKKEAPAVPS  60
   61 APPSYEEATS GEGMKAGAFP PAPTAVPLHP SWAYVDPSSS SSYDNGFPTG DHELFTTFSW 120
  121 DDQKVRRVFV RKVYTILLIQ LLVTLAVVAL FTFCDPVKDY VQANPGWYWA SYAVFFATYL 180
  181 TLACCSGPRR HFPWNLILLT VFTLSMAYLT GMLSSYYNTT SVLLCLGITA LVCLSVTVFS 240
  241 FQTKFDFTSC QGVLFVLLMT LFFSGLILAI LLPFQYVPWL HAVYAALGAG VFTLFLALDT 300
  301 QLLMGNRRHS LSPEEYIFGA LNIYLDIIYI FTFFLQLFGT NRE

Type	Start	End	Confidence
Cytoplasmic	1	132	0.99
Transmembrane Helix	133	154	0.92
Non-Cytoplasmic	155	165	0.91
Transmembrane Helix	166	185	0.92
Cytoplasmic	186	191	0.84
Transmembrane Helix	192	212	0.91
Non-Cytoplasmic	213	219	0.75
Transmembrane Helix	220	241	0.93
Cytoplasmic	242	251	0.83
Transmembrane Helix	252	272	0.95
Non-Cytoplasmic	273	279	0.76
Transmembrane Helix	280	303	0.85
Cytoplasmic	304	315	0.95
Transmembrane Helix	316	338	0.86
Non-Cytoplasmic	339	343	0.84