YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCE1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALGGDGLR LLSVSRPERP PESAALGGLG PGLCCWVSVF SCLSLACSYV GSLYVWKSEL  60
   61 PRDHPAVIKR RFTSVLVVSS LSPLCVLLWR ELTGIQPGTS LLTLMGFRLE GIFPAALLPL 120
  121 LLTMILFLGP LMQLSMDCPC DLADGLKVVL APRSWARCLT DMRWLRNQVI APLTEELVFR 180
  181 ACMLPMLAPC MGLGPAVFTC PLFFGVAHFH HIIEQLRFRQ SSVGNIFLSA AFQFSYTAVF 240
  241 GAYTAFLFIR TGHLIGPVLC HSFCNYMGFP AVCAALEHPQ RRPLLAGYAL GVGLFLLLLQ 300
  301 PLTDPKLYGS LPLCVLLERA GDSEAPLCS

Type	Start	End	Confidence
Cytoplasmic	1	25	0.51
Transmembrane Helix	26	53	0.77
Non-Cytoplasmic	54	71	0.44
Transmembrane Helix	72	92	0.85
Cytoplasmic	93	106	0.48
Transmembrane Helix	107	129	0.84
Non-Cytoplasmic	130	186	0.52
Transmembrane Helix	187	212	0.79
Cytoplasmic	213	222	0.62
Transmembrane Helix	223	247	0.82
Non-Cytoplasmic	248	253	0.53
Transmembrane Helix	254	276	0.74
Cytoplasmic	277	283	0.76
Transmembrane Helix	284	303	0.91
Non-Cytoplasmic	304	329	0.79