YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|24371272, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPPGGGGPMK DCEYSQISTH SSSPMESPHK KKKIAARRKW EVFPGRNKFF CNGRIMMARQ  60
   61 TGVFYLTLVL ILVTSGLFFA FDCPYLAVKI TPAIPAVAGI LFFFVMGTLL RTSFSDPGVL 120
  121 PRATPDEAAD LERQIDIANG TSSGGYRPPP RTKEVIINGQ TVKLKYCFTC KIFRPPRASH 180
  181 CSLCDNCVER FDHHCPWVGN CVGKRNYRFF YMFILSLSFL TVFIFAFVIT HVILRSQQTG 240
  241 FLNALKDSPA SVLEAVVCFF SVWSIVGLSG FHTYLISSNQ TTNEDIKGSW SNKRGKENYN 300
  301 PYSYGNIFTN CCVALCGPIS PSLIDRRGYI QPDTPQPAAP SNGITMYGAT QSQSDMAAAT 360
  361 PLLQSEPSLT SDELHLPGKP GLGTPCASLT LGPPTPPASM PNLAEATLAD VMPRKDEHMG 420
  421 HQFLTPDEAP SPPRLLAAGS PLAHSRTMHV LGLASQDSLH EDSVRGLVKL SSV

Type	Start	End	Confidence
Cytoplasmic	1	61	0.98
Transmembrane Helix	62	81	0.95
Non-Cytoplasmic	82	89	0.73
Transmembrane Helix	90	112	0.87
Cytoplasmic	113	208	0.98
Transmembrane Helix	209	233	0.89
Non-Cytoplasmic	234	251	0.92
Transmembrane Helix	252	274	0.66
Cytoplasmic	275	473	0.64