YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTN3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAATQS HSISSSSFGA EPSAPGGGGS PGACPALGTK SCSSSCAVHD LIFWRDVKKT  60
   61 GFVFGTTLIM LLSLAAFSVI SVVSYLILAL LSVTISFRIY KSVIQAVQKS EEGHPFKAYL 120
  121 DVDITLSSEA FHNYMNAAMV HINRALKLII RLFLVEDLVD SLKLAVFMWL MTYVGAVFNG 180
  181 ITLLILAELL IFSVPIVYEK YKTQIDHYVG IARDQTKSIV EKIQAKLPGI AKKKAE

Type	Start	End	Confidence
Cytoplasmic	1	61	0.85
Transmembrane Helix	62	89	0.84
Non-Cytoplasmic	90	168	0.70
Transmembrane Helix	169	192	0.81
Cytoplasmic	193	236	0.66