YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KRT6B
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASTSTTIRS HSSSRRGFSA SSARLPGVSR SGFSSISVSR SRGSGGLGGA CGGAGFGSRS  60
   61 LYGLGGSKRI SIGGGSCAIS GGYGSRAGGS YGFGGAGSGF GFGGGAGIGF GLGGGAGLAG 120
  121 GFGGPGFPVC PPGGIQEVTV NQSLLTPLNL QIDPAIQRVR AEEREQIKTL NNKFASFIDK 180
  181 VRFLEQQNKV LDTKWTLLQE QGTKTVRQNL EPLFEQYINN LRRQLDSIVG ERGRLDSELR 240
  241 NMQDLVEDLK NKYEDEINKR TAAENEFVTL KKDVDAAYMN KVELQAKADT LTDEINFLRA 300
  301 LYDAELSQMQ THISDTSVVL SMDNNRNLDL DSIIAEVKAQ YEEIAQRSRA EAESWYQTKY 360
  361 EELQVTAGRH GDDLRNTKQE IAEINRMIQR LRSEIDHVKK QCANLQAAIA DAEQRGEMAL 420
  421 KDAKNKLEGL EDALQKAKQD LARLLKEYQE LMNVKLALDV EIATYRKLLE GEECRLNGEG 480
  481 VGQVNISVVQ STVSSGYGGA SGVGSGLGLG GGSSYSYGSG LGVGGGFSSS SGRATGGGLS 540
  541 SVGGGSSTIK YTTTSSSSRK SYKH

Type	Start	End	Confidence
Cytoplasmic	1	42	0.76
Transmembrane Helix	43	63	0.57
Non-Cytoplasmic	64	98	0.41
Transmembrane Helix	99	124	0.76
Cytoplasmic	125	495	0.57
Transmembrane Helix	496	512	0.42
Non-Cytoplasmic	513	564	0.53