YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2281752, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.67
Transmembrane Helix	12	33	0.69
Non-Cytoplasmic	34	99	0.53
Transmembrane Helix	100	121	0.64
Cytoplasmic	122	138	0.68
Transmembrane Helix	139	160	0.89
Non-Cytoplasmic	161	168	0.67
Transmembrane Helix	169	191	0.77
Cytoplasmic	192	223	0.68
Transmembrane Helix	224	245	0.90
Non-Cytoplasmic	246	337	0.74
Transmembrane Helix	338	359	0.93
Cytoplasmic	360	487	0.98
Transmembrane Helix	488	509	0.95
Non-Cytoplasmic	510	517	0.91
Transmembrane Helix	518	539	0.88
Cytoplasmic	540	550	0.72
Transmembrane Helix	551	571	0.76
Non-Cytoplasmic	572	575	0.58
Transmembrane Helix	576	593	0.54
Cytoplasmic	594	613	0.67
Transmembrane Helix	614	636	0.90
Non-Cytoplasmic	637	689	0.78
Transmembrane Helix	690	711	0.84
Cytoplasmic	712	1242	0.94
Transmembrane Helix	1243	1263	0.92
Non-Cytoplasmic	1264	1281	0.86
Transmembrane Helix	1282	1302	0.83
Cytoplasmic	1303	1311	0.78
Transmembrane Helix	1312	1332	0.90
Non-Cytoplasmic	1333	1379	0.91
Transmembrane Helix	1380	1399	0.93
Cytoplasmic	1400	1489	0.89
Transmembrane Helix	1490	1512	0.95
Non-Cytoplasmic	1513	1567	0.88
Transmembrane Helix	1568	1590	0.87
Cytoplasmic	1591	1599	0.82
Transmembrane Helix	1600	1623	0.87
Non-Cytoplasmic	1624	1639	0.73
Transmembrane Helix	1640	1660	0.75
Cytoplasmic	1661	1688	0.69
Transmembrane Helix	1689	1710	0.89
Non-Cytoplasmic	1711	1746	0.72
Transmembrane Helix	1747	1766	0.65
Cytoplasmic	1767	1786	0.91
Transmembrane Helix	1787	1811	0.91
Non-Cytoplasmic	1812	2505	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARFGDEMPA RYGGGGSGAA AGVVVGSGGG RGAGGSRQGG QPGAQRMYKQ SMAQRARTMA  60
   61 LYNPIPVRQN CLTVNRSLFL FSEDNVVRKY AKKITEWPPF EYMILATIIA NCIVLALEQH 120
  121 LPDDDKTPMS ERLDDTEPYF IGIFCFEAGI KIIALGFAFH KGSYLRNGWN VMDFVVVLTG 180
  181 ILATVGTEFD LRTLRAVRVL RPLKLVSGIP SLQVVLKSIM KAMIPLLQIG LLLFFAILIF 240
  241 AIIGLEFYMG KFHTTCFEEG TDDIQGESPA PCGTEEPART CPNGTKCQPY WEGPNNGITQ 300
  301 FDNILFAVLT VFQCITMEGW TDLLYNSNDA SGNTWNWLYF IPLIIIGSFF MLNLVLGVLS 360
  361 GEFAKERERV ENRRAFLKLR RQQQIERELN GYMEWISKAE EVILAEDETD GEQRHPFDGA 420
  421 LRRTTIKKSK TDLLNPEEAE DQLADIASVG SPFARASIKS AKLENSTFFH KKERRMRFYI 480
  481 RRMVKTQAFY WTVLSLVALN TLCVAIVHYN QPEWLSDFLY YAEFIFLGLF MSEMFIKMYG 540
  541 LGTRPYFHSS FNCFDCGVII GSIFEVIWAV IKPGTSFGIS VLRALRLLRI FKVTKYWASL 600
  601 RNLVVSLLNS MKSIISLLFL LFLFIVVFAL LGMQLFGGQF NFDEGTPPTN FDTFPAAIMT 660
  661 VFQILTGEDW NEVMYDGIKS QGGVQGGMVF SIYFIVLTLF GNYTLLNVFL AIAVDNLANA 720
  721 QELTKDEQEE EEAANQKLAL QKAKEVAEVS PLSAANMSIA VKEQQKNQKP AKSVWEQRTS 780
  781 EMRKQNLLAS REALYNEMDP DERWKAAYTR HLRPDMKTHL DRPLVVDPQE NRNNNTNKSR 840
  841 AAEPTVDQRL GQQRAEDFLR KQARYHDRAR DPSGSAGLDA RRPWAGSQEA ELSREGPYGR 900
  901 ESDHHAREGS LEQPGFWEGE AERGKAGDPH RRHVHRQGGS RESRSGSPRT GADGEHRRHR 960
  961 AHRRPGEEGP EDKAERRARH REGSRPARGG EGEGEGPDGG ERRRRHRHGA PATYEGDARR1020
 1021 EDKERRHRRR KENQGSGVPV SGPNLSTTRP IQQDLGRQDP PLAEDIDNMK NNKLATAESA1080
 1081 APHGSLGHAG LPQSPAKMGN STDPGPMLAI PAMATNPQNA ASRRTPNNPG NPSNPGPPKT1140
 1141 PENSLIVTNP SGTQTNSAKT ARKPDHTTVD IPPACPPPLN HTVVQVNKNA NPDPLPKKEE1200
 1201 EKKEEEEDDR GEDGPKPMPP YSSMFILSTT NPLRRLCHYI LNLRYFEMCI LMVIAMSSIA1260
 1261 LAAEDPVQPN APRNNVLRYF DYVFTGVFTF EMVIKMIDLG LVLHQGAYFR DLWNILDFIV1320
 1321 VSGALVAFAF TGNSKGKDIN TIKSLRVLRV LRPLKTIKRL PKLKAVFDCV VNSLKNVFNI1380
 1381 LIVYMLFMFI FAVVAVQLFK GKFFHCTDES KEFEKDCRGK YLLYEKNEVK ARDREWKKYE1440
 1441 FHYDNVLWAL LTLFTVSTGE GWPQVLKHSV DATFENQGPS PGYRMEMSIF YVVYFVVFPF1500
 1501 FFVNIFVALI IITFQEQGDK MMEEYSLEKN ERACIDFAIS AKPLTRHMPQ NKQSFQYRMW1560
 1561 QFVVSPPFEY TIMAMIALNT IVLMMKFYGA SVAYENALRV FNIVFTSLFS LECVLKVMAF1620
 1621 GILNYFRDAW NIFDFVTVLG SITDILVTEF GNNFINLSFL RLFRAARLIK LLRQGYTIRI1680
 1681 LLWTFVQSFK ALPYVCLLIA MLFFIYAIIG MQVFGNIGID VEDEDSDEDE FQITEHNNFR1740
 1741 TFFQALMLLF RSATGEAWHN IMLSCLSGKP CDKNSGILTR ECGNEFAYFY FVSFIFLCSF1800
 1801 LMLNLFVAVI MDNFEYLTRD SSILGPHHLD EYVRVWAEYD PAACGRIHYK DMYSLLRVIS1860
 1861 PPLGLGKKCP HRVACKRLLR MDLPVADDNT VHFNSTLMAL IRTALDIKIA KGGADKQQMD1920
 1921 AELRKEMMAI WPNLSQKTLD LLVTPHKSTD LTVGKIYAAM MIMEYYRQSK AKKLQAMREE1980
 1981 QDRTPLMFQR MEPPSPTQEG GPGQNALPST QLDPGGALMA HESGLKESPS WVTQRAQEMF2040
 2041 QKTGTWSPEQ GPPTDMPNSQ PNSQSVEMRE MGRDGYSDSE HYLPMEGQGR AASMPRLPAE2100
 2101 NQRRRGRPRG NNLSTISDTS PMKRSASVLG PKARRLDDYS LERVPPEENQ RHHQRRRDRS2160
 2161 HRASERSLGR YTDVDTGLGT DLSMTTQSGD LPSKERDQER GRPKDRKHRQ HHHHHHHHHH2220
 2221 PPPPDKDRYA QERPDHGRAR ARDQRWSRSP SEGREHMAHR QGSSSVSGSP APSTSGTSTP2280
 2281 RRGRRQLPQT PSTPRPHVSY SPVIRKAGGS GPPQQQQQQQ QQQQAVARPG RAATSGPRRY2340
 2341 PGPTAEPLAG DRPPTGGHSS GRSPRMERRV PGPARSESPR ACRHGGARWP ASGPHVSEGP2400
 2401 PGPRHHGYYR GSDYDEADGP GSGGGEEAMA GAYDAPPPVR HASSGATGRS PRTPRASGPA2460
 2461 CASPSRHGRR LPNGYYPAHG LARPRGPGSR KGLHEPYSES DDDWC