YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S6A19_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	38	0.99
Transmembrane Helix	39	60	0.89
Non-Cytoplasmic	61	68	0.82
Transmembrane Helix	69	88	0.96
Cytoplasmic	89	112	0.84
Transmembrane Helix	113	134	0.89
Non-Cytoplasmic	135	192	0.95
Transmembrane Helix	193	213	0.94
Cytoplasmic	214	222	0.85
Transmembrane Helix	223	244	0.87
Non-Cytoplasmic	245	272	0.89
Transmembrane Helix	273	295	0.87
Cytoplasmic	296	303	0.87
Transmembrane Helix	304	325	0.89
Non-Cytoplasmic	326	414	0.93
Transmembrane Helix	415	436	0.87
Cytoplasmic	437	456	0.87
Transmembrane Helix	457	475	0.95
Non-Cytoplasmic	476	488	0.77
Transmembrane Helix	489	511	0.93
Cytoplasmic	512	531	0.96
Transmembrane Helix	532	552	0.97
Non-Cytoplasmic	553	580	0.96
Transmembrane Helix	581	603	0.91
Cytoplasmic	604	634	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRLVLPNPG LEDRIPSLDE LEVIEKEEAS SRPKWDNKAQ YMLTCVGFCV GLGNVWRFPY  60
   61 LCQSHGGGAF MIPFLILLVL EGIPLLHLEF AIGQRLRKGS VGVWSSIHPA LKGVGIASMF 120
  121 VSFMVGLYYN TIIAWVMWYF FNSFQEPLPW SECPLNQNQT GYVEECAKSS SVDYFWYRET 180
  181 LNISTSISDS GSIQWWILLC LTCAWSVLYV CTIRGIETTG KAVYITSTLP YVVLTIFLIR 240
  241 GLTLKGATNG IVFLFTPNIT ELSNPNTWLD AGAQVFYSFS LAFGGLISFS SYNSVHNNCE 300
  301 MDSVIVSIIN GFTSVYAATV VYSIIGFRAT ERFDDCVNTN ILTLINGFDL PEGNVTAENF 360
  361 EAYQHWCNAT NPEAYAQLTF QTCDINTFLS EGVEGTGLAF IVFTEAITKM PVSPLWSVLF 420
  421 FIMLFCLGLS SMFGNMEGVV VPLQDLNITP KKWPKELLTG LICLGTYLIA FIFTLNSGQY 480
  481 WLSLLDSYAG SIPLLIIAFC EMFAVVYVYG VDRFNKDIEF MIGHKPNIFW QVTWRVVSPL 540
  541 IMLVIFLFFF VIEVNKQLMY SVWDPDYEEF PKSQKVPYPD WVYAVVVIVA GVPCLTIPCF 600
  601 AIYKLIRNYC QKSGDQHGLV NALSTASVNG DLKN