YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIGO
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.53
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.52
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	320	0.91
Transmembrane Helix	321	340	0.68
Cytoplasmic	341	447	0.81
Transmembrane Helix	448	473	0.84
Non-Cytoplasmic	474	478	0.73
Transmembrane Helix	479	501	0.89
Cytoplasmic	502	509	0.68
Transmembrane Helix	510	531	0.92
Non-Cytoplasmic	532	538	0.77
Transmembrane Helix	539	560	0.91
Cytoplasmic	561	571	0.67
Transmembrane Helix	572	590	0.93
Non-Cytoplasmic	591	618	0.78
Transmembrane Helix	619	637	0.64
Cytoplasmic	638	666	0.70
Transmembrane Helix	667	688	0.93
Non-Cytoplasmic	689	701	0.69
Transmembrane Helix	702	722	0.93
Cytoplasmic	723	740	0.59
Transmembrane Helix	741	760	0.87
Non-Cytoplasmic	761	827	0.75
Transmembrane Helix	828	850	0.87
Cytoplasmic	851	856	0.70
Transmembrane Helix	857	879	0.88
Non-Cytoplasmic	880	885	0.67
Transmembrane Helix	886	907	0.66
Cytoplasmic	908	913	0.51
Transmembrane Helix	914	937	0.58
Non-Cytoplasmic	938	942	0.70
Transmembrane Helix	943	964	0.89
Cytoplasmic	965	1011	0.82
Transmembrane Helix	1012	1034	0.87
Non-Cytoplasmic	1035	1047	0.73
Transmembrane Helix	1048	1072	0.86
Cytoplasmic	1073	1089	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKASVLLFL AWVCFLFYAG IALFTSGFLL TRLELTNHSS CQEPPGPGSL PWGSQGKPGA  60
   61 CWMASRFSRV VLVLIDALRF DFAQPQHSHV PREPPVSLPF LGKLSSLQRI LEIQPHHARL 120
  121 YRSQVDPPTT TMQRLKALTT GSLPTFIDAG SNFASHAIVE DNLIKQLTSA GRRVVFMGDD 180
  181 TWKDLFPGAF SKAFFFPSFN VRDLDTVDNG ILEHLYPTMD SGEWDVLIAH FLGVDHCGHK 240
  241 HGPHHPEMAK KLSQMDQVIQ GLVERLENDT LLVVAGDHGM TTNGDHGGDS ELEVSAALFL 300
  301 YSPTAVFPST PPEEPEVIPQ VSLVPTLALL LGLPIPFGNI GEVMAELFSG GEDSQPHSSA 360
  361 LAQASALHLN AQQVSRFLHT YSAATQDLQA KELHQLQNLF SKASADYQWL LQSPKGAEAT 420
  421 LPTVIAELQQ FLRGARAMCI ESWARFSLVR MAGGTALLAA SCFICLLASQ WAISPGFPFC 480
  481 PLLLTPVAWG LVGAIAYAGL LGTIELKLDL VLLGAVAAVS SFLPFLWKAW AGWGSKRPLA 540
  541 TLFPIPGPVL LLLLFRLAVF FSDSFVVAEA RATPFLLGSF ILLLVVQLHW EGQLLPPKLL 600
  601 TMPRLGTSAT TNPPRHNGAY ALRLGIGLLL CTRLAGLFHR CPEETPVCHS SPWLSPLASM 660
  661 VGGRAKNLWY GACVAALVAL LAAVRLWLRR YGNLKSPEPP MLFVRWGLPL MALGTAAYWA 720
  721 LASGADEAPP RLRVLVSGAS MVLPRAVAGL AASGLALLLW KPVTVLVKAG AGAPRTRTVL 780
  781 TPFSGPPTSQ ADLDYVVPQI YRHMQEEFRG RLERTKSQGP LTVAAYQLGS VYSAAMVTAL 840
  841 TLLAFPLLLL HAERISLVFL LLFLQSFLLL HLLAAGIPVT TPGPFTVPWQ AVSAWALMAT 900
  901 QTFYSTGHQP VFPAIHWHAA FVGFPEGHGS CTWLPALLVG ANTFASHLLF AVGCPLLLLW 960
  961 PFLCESQGLR KRQQPPGNEA DARVRPEEEE EPLMEMRLRD APQHFYAALL QLGLKYLFIL1020
 1021 GIQILACALA ASILRRHLMV WKVFAPKFIF EAVGFIVSSV GLLLGIALVM RVDGAVSSWF1080
 1081 RQLFLAQQR