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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7243181
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.34
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SKRSKIFKDR KPQEPPRSAL LFVFFQIFFC FVVVGEVIGW LTGCGKLLPF LLEMIVLLLF  60
   61 ALLWMVEGVF SQLHYTVQEE QEHGTFVGNI AEDLGLDITK LSARGFQTVP NSRTPYLDLN 120
  121 LETGVLYVNE KIDREQICKQ SPSCVLHLEV FLENPLELFQ VEIEVLDIND NPPSFPEPDL 180
  181 TVEISESATP GTRFPLESAF DPDVGTNSLR DYEITPNSYF SLDVQTQGDG NRFAELVLEK 240
  241 PLDREQQAVH RYVLTAVDGG GGGGVGEGGG GGGGAGLPPQ QQRTGTALLT IRVLDSNDNV 300
  301 PAFDQPVYTV SLPENSPPGT LVIQLNATDP DEGQNGEVVY SFSSHISPRA RELFGLSPRT 360
  361 GRLEVSGELD YEESPVYQVY VQAKDLGPNA VPAHCKVLVR VLDANDNAPE ISFSTVKEAV 420
  421 SEGAAPGTVV ALFSVTDRDS EENGQVQCEL LGDVPFRLKS SFKNYYTIVT EAPLDREAGD 480
  481 SYTLTVVARD RGEPALSTSK SIQVQVSDVN DNAPRFSQPV YDVYVTENNV PGAYIYAVSA 540
  541 TDRDEGANAQ LAYSILECQI QGMSVFTYVS INSENGYLYA LRSFDYEQLK DFSFQVEARD 600
  601 AGSPQALAGN ATVNILIVDQ NDNAPAIVAP LPGRNGTPAR EVLPRSAEPG YLLTRVAAVD 660
  661 ADDGENARLT YSIVRGNEMN LFRMDWRTGE LRTARRVPAK RDPQRPYELV IEVRDHGQPP 720
  721 LSSTATLVVQ LVDGAVEPQG GGGSGGGGSG EHQRPSRSGG GETSLDLTLI LIIALGSVSF 780
  781 IFLLAMIVLA VRCQKEKKLN IYTCLASDCC LCCCCCGGGG STCCGRQARA RKKKLSKSDI 840
  841 MLVQSSNVPS NPAQVPIEES GGFGSHHHNQ NYCYQVCLTP ESAKTDLMFL KPCSPSRSTD 900
  901 TEHNPCGAIV TGYTDQQPDI ISNGSILSNE TKHQRAELSY LVDRPRRVNS SAFQEADIVS 960
  961 SKDSGHGDSE QGDSDHDATN RAQSAGMDLF SNCTEECKAL GHSDRCWMPS FVPSDGRQAA1020
 1021 DYRSNLHVPG MDSVPDTEVF ETPEAQPGAE RSFSTFGKEK ALHSTLERKE LDGLLTNTRA1080
 1081 PYKPPYLTRK RIC

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle