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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|7243187
Protein type: Transmembrane
Type Confidence: 0.72
Topology Confidence: 0.21
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGTPTRRHCW RESYWGGSWS SKMLSRPKPG ESEVDLLHFQ SQFLAAGAAP AVQLVKKGNR  60
   61 GGGDANSDRP PLQDHRDVVM LDNLPDLPPA LVPSPPKRAR PSPGHCLPED EDPEERLRRH 120
  121 DQHITAVLTK IIERDTSSVA VNLPVPSGVA FPAVFLRSRD TQGKSATSGK RSIFAQEIAA 180
  181 RRIAEAKGPS VGEVVPNVGP PEGAVTCETP TPRNQGCQLP GSSHSFQGPN LVTGKGLRDQ 240
  241 EAEQEAQTIH EENIARLQAM APEEILQEQQ RLLAQLDPSL VAFLRSHSHT QEQTGETASE 300
  301 EQRPGGPSAN VTKEEPLMSA FASEPRKRDK LEPEAPALAL PVTPQKEWLH MDTVELEKLH 360
  361 WTQDLPPVRR QQTQERMQAR FSLQGELLAP DVDLPTHLGL HHHGEEAERA GYSLQELFHL 420
  421 TRSQVSQQRA LALHVLAQVI SRAQAGEFGD RLAGSVLSLL LDAGFLFLLR FSLDDRVDGV 480
  481 IATAIRALRA LLVAPGDEEL LDSTFSWYHG ALTFPLMPSQ EDKEDEDKDE ECPAGKAKRK 540
  541 SPEEESRPPP DLARHDVIKG LLATSLLPRL RYVLEVTYPG PAVVLDILAV LIRLARHSLE 600
  601 SATRVLECPR LIETIVREFL PTSWSPVGAG PTPSLYKVPC ATAMKLLRVL ASAGRNIAAR 660
  661 LLSSFDLRSR LCRIIAEAPQ ELALPPEEAE MLSTEALRLW AVAASYGQGG YLYRELYPVL 720
  721 MRALQVVPRE LSTHPPQPLS MQRIASLLTL LTQLTLAAGS TPAETISDSA EASLSATPSL 780
  781 VTWTQVSGLQ PLVEPCLRQT LKLLSRPEMW RAVGPVPVAC LLFLGAYYQA WSQQPSSCPE 840
  841 DWLQDMERLS EELLLPLLSQ PTLGSLWDSL RHCSLLCNPL SCVPALEAPP SLVSLGCSGG 900
  901 CPRLSLAGSA SPFPFLTALL SLLNTLAQIH KGLCGQLAAI LAAPGLQNYF LQCVAPGAAP 960
  961 HLTPFSAWAL RHEYHLQYLA LALAQKAAAL QPLPATHAAL YHGMALALLS RLLPGSEYLT1020
 1021 HELLLSCVFR LEFLPERTSG GPEAADFSDQ LSLGSSRVPR CGQGTLLAQA CQDLPSIRNC1080
 1081 YLTHCSPARA SLLASQALHR GELQRVPTLL LPMPTEPLLP TDWPFLPLIR LYHRASDTPS1140
 1141 GLSPTDTMGT AMRVLQWVLV LESWRPQALW AVPPAARLAR LMCVFLVDSE LFRESPVQHL1200
 1201 VAALLAQLCQ PQVLPNLNLD CRLPGLTSFP DLYANFLDHF EAVSFGDHLF GALVLLPLQR1260
 1261 RFSVTLRLAL FGEHVGALRA LSLPLTQVLS QPSRTCKGTL HWASGAVLSL EELWKTSASS1320
 1321 SYLLGALRGL RESMKRA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle