YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	APH1B
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAAVFFGCA FIAFGPALAL YVFTIATEPL RIIFLIAGAF FWLVSLLISS LVWFMARVII  60
   61 DNKDGPTQKY LLIFGAFVSV YIQEMFRFAY YKLLKKASEG LKSINPGETA PSMRLLAYVS 120
  121 GLGFGIMSGV FSFVNTLSDS LGPGTVGIHG DSPQFFLYSA FMTLVIILLH VFWGIVFFDG 180
  181 CEKKKWGILL IVLLTHLLVS AQTFISSYYG INLASAFIIL VLMGTWAFLA AGGSCRSLKL 240
  241 CLLCQDKNFL LYNQRSR

Type	Start	End	Confidence
Non-Cytoplasmic	1	3	0.84
Transmembrane Helix	4	25	0.90
Cytoplasmic	26	31	0.76
Transmembrane Helix	32	56	0.88
Non-Cytoplasmic	57	69	0.77
Transmembrane Helix	70	91	0.78
Cytoplasmic	92	114	0.91
Transmembrane Helix	115	134	0.96
Non-Cytoplasmic	135	154	0.91
Transmembrane Helix	155	177	0.93
Cytoplasmic	178	185	0.91
Transmembrane Helix	186	205	0.95
Non-Cytoplasmic	206	212	0.72
Transmembrane Helix	213	233	0.90
Cytoplasmic	234	257	0.94