YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|17389331
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	60	0.93
Transmembrane Helix	61	82	0.73
Non-Cytoplasmic	83	139	0.64
Transmembrane Helix	140	159	0.51
Cytoplasmic	160	181	0.59
Transmembrane Helix	182	206	0.57
Non-Cytoplasmic	207	223	0.81
Transmembrane Helix	224	244	0.90
Cytoplasmic	245	255	0.87
Transmembrane Helix	256	280	0.87
Non-Cytoplasmic	281	309	0.94
Transmembrane Helix	310	330	0.91
Cytoplasmic	331	337	0.81
Transmembrane Helix	338	356	0.88
Non-Cytoplasmic	357	361	0.81
Transmembrane Helix	362	380	0.93
Cytoplasmic	381	387	0.78
Transmembrane Helix	388	406	0.88
Non-Cytoplasmic	407	554	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRPLSKCGM EPGGGDASLT LHGLQNRSHG KIKLRKRKST LYFNTQEKSA RRRGDLLGEN  60
   61 IYLLLFTLAL RILNCFLVQT SFVPDEYWQS LEVSHHMVFN YGYLTWEWTE RLRSYTYPLI 120
  121 FASIYKILHL LGKDSVQLLI WIPRLAQALL SAVADVRLYS LMKQLENQEV ARWVFFCQLC 180
  181 SWFTWYCCTR TLTNTMETVL TIIALFYYPL EGSKSMNSVK YSSLVALAFI IRPTAVILWT 240
  241 PLLFRHFCQE PRKLDLILHH FLPVGFVTLS LSLMIDRIFF GQWTLVQFNF LKFNVLQNLG 300
  301 TFYGSHPWHW YFSQGFPVIL GTHLPFFIHG CYLAPKRYRI LLVTVLWTLL VYSMLSHKEF 360
  361 RFIYPVLPFC MVFCGYSLTH LKTWKKPALS FLFLSNLFLA LYTGLVHQRG TLDVMSHIQK 420
  421 VCYNNPNKSS ASIFIMMPCH STPYYSHVHC PLPMRFLQCP PDLTGKSHYL DEADVFYLNP 480
  481 LNWSHREFHD DASLPTHLIT FSILEEEISA FLISSNYKRT AVFFHTHLPE GRIGSHIYVY 540
  541 ERKLKGKFNM KMKF