YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC35F5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.98
Transmembrane Helix	69	87	0.91
Non-Cytoplasmic	88	102	0.75
Transmembrane Helix	103	124	0.89
Cytoplasmic	125	237	0.99
Transmembrane Helix	238	258	0.86
Non-Cytoplasmic	259	266	0.83
Transmembrane Helix	267	288	0.94
Cytoplasmic	289	296	0.86
Transmembrane Helix	297	318	0.92
Non-Cytoplasmic	319	327	0.85
Transmembrane Helix	328	347	0.95
Cytoplasmic	348	358	0.92
Transmembrane Helix	359	381	0.89
Non-Cytoplasmic	382	394	0.80
Transmembrane Helix	395	411	0.68
Cytoplasmic	412	412	0.27
Transmembrane Helix	413	441	0.78
Non-Cytoplasmic	442	451	0.54
Transmembrane Helix	452	477	0.84
Cytoplasmic	478	523	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVPPRRHRGA GRPGVLSSSP PFRLRSAKFS GIALEDLRRA LKTRLQMVCV FVMNRMNSQN  60
   61 SGFTQRRRMA LGIVILLLVD VIWVASSELT SYVFTQYNKP FFSTFAKTSM FVLYLLGFII 120
  121 WKPWRQQCTR GLRGKHAAFF ADAEGYFAAC TTDTTMNSSL SEPLYVPVKF HDLPSEKPES 180
  181 TNIDTEKTPK KSRVRFSNIM EIRQLPSSHA LEAKLSRMSY PVKEQESILK TVGKLTATQV 240
  241 AKISFFFCFV WFLANLSYQE ALSDTQVAIV NILSSTSGLF TLILAAVFPS NSGDRFTLSK 300
  301 LLAVILSIGG VVLVNLAGSE KPAGRDTVGS IWSLAGAMLY AVYIVMIKRK VDREDKLDIP 360
  361 MFFGFVGLFN LLLLWPGFFL LHYTGFEDFE FPNKVVLMCI IINGLIGTVL SEFLWLWGCF 420
  421 LTSSLIGTLA LSLTIPLSII ADMCMQKVQF SWLFFAGAIP VFFSFFIVTL LCHYNNWDPV 480
  481 MVGIRRIFAF ICRKHRIQRV PEDSEQCESL ISMHSVSQED GAS