YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STT3B
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.59
Transmembrane Helix	66	92	0.76
Non-Cytoplasmic	93	133	0.54
Transmembrane Helix	134	157	0.87
Cytoplasmic	158	168	0.47
Transmembrane Helix	169	188	0.88
Non-Cytoplasmic	189	195	0.48
Transmembrane Helix	196	217	0.85
Cytoplasmic	218	234	0.41
Transmembrane Helix	235	258	0.52
Non-Cytoplasmic	259	261	0.56
Transmembrane Helix	262	282	0.85
Cytoplasmic	283	289	0.87
Transmembrane Helix	290	311	0.92
Non-Cytoplasmic	312	320	0.78
Transmembrane Helix	321	340	0.94
Cytoplasmic	341	350	0.92
Transmembrane Helix	351	374	0.91
Non-Cytoplasmic	375	412	0.93
Transmembrane Helix	413	433	0.92
Cytoplasmic	434	441	0.83
Transmembrane Helix	442	460	0.83
Non-Cytoplasmic	461	461	0.39
Transmembrane Helix	462	484	0.64
Cytoplasmic	485	537	0.58
Transmembrane Helix	538	557	0.90
Non-Cytoplasmic	558	826	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEPSAPESK HKSSLNSSPW SGLMALGNSR HGHHGPGAQC AHKAAGGAAP PKPAPAGLSG  60
   61 GLSQPAGWQS LLSFTILFLA WLAGFSSRLF AVIRFESIIH EFDPWFNYRS THHLASHGFY 120
  121 EFLNWFDERA WYPLGRIVGG TVYPGLMITA GLIHWILNTL NITVHIRDVC VFLAPTFSGL 180
  181 TSISTFLLTR ELWNQGAGLL AACFIAIVPG YISRSVAGSF DNEGIAIFAL QFTYYLWVKS 240
  241 VKTGSVFWTM CCCLSYFYMV SAWGGYVFII NLIPLHVFVL LLMQRYSKRV YIAYSTFYIV 300
  301 GLILSMQIPF VGFQPIRTSE HMAAAGVFAL LQAYAFLQYL RDRLTKQEFQ TLFFLGVSLA 360
  361 AGAVFLSVIY LTYTGYIAPW SGRFYSLWDT GYAKIHIPII ASVSEHQPTT WVSFFFDLHI 420
  421 LVCTFPAGLW FCIKNINDER VFVALYAISA VYFAGVMVRL MLTLTPVVCM LSAIAFSNVF 480
  481 EHYLGDDMKR ENPPVEDSSD EDDKRNQGNL YDKAGKVRKH ATEQEKTEEG LGPNIKSIVT 540
  541 MLMLMLLMMF AVHCTWVTSN AYSSPSVVLA SYNHDGTRNI LDDFREAYFW LRQNTDEHAR 600
  601 VMSWWDYGYQ IAGMANRTTL VDNNTWNNSH IALVGKAMSS NETAAYKIMR TLDVDYVLVI 660
  661 FGGVIGYSGD DINKFLWMVR IAEGEHPKDI RESDYFTPQG EFRVDKAGSP TLLNCLMYKM 720
  721 SYYRFGEMQL DFRTPPGFDR TRNAEIGNKD IKFKHLEEAF TSEHWLVRIY KVKAPDNRET 780
  781 LDHKPRVTNI FPKQKYLSKK TTKRKRGYIK NKLVFKKGKK ISKKTV