YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC6A13
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.91
Transmembrane Helix	41	60	0.85
Non-Cytoplasmic	61	69	0.78
Transmembrane Helix	70	92	0.86
Cytoplasmic	93	115	0.85
Transmembrane Helix	116	141	0.80
Non-Cytoplasmic	142	203	0.96
Transmembrane Helix	204	224	0.94
Cytoplasmic	225	232	0.89
Transmembrane Helix	233	255	0.86
Non-Cytoplasmic	256	282	0.86
Transmembrane Helix	283	303	0.93
Cytoplasmic	304	314	0.84
Transmembrane Helix	315	338	0.90
Non-Cytoplasmic	339	365	0.92
Transmembrane Helix	366	388	0.82
Cytoplasmic	389	417	0.89
Transmembrane Helix	418	440	0.90
Non-Cytoplasmic	441	448	0.84
Transmembrane Helix	449	473	0.91
Cytoplasmic	474	491	0.97
Transmembrane Helix	492	513	0.93
Non-Cytoplasmic	514	531	0.92
Transmembrane Helix	532	555	0.89
Cytoplasmic	556	602	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSRVSGTTS NGETKPVYPV MEKKEEDGTL ERGHWNNKME FVLSVAGEII GLGNVWRFPY  60
   61 LCYKNGGGAF FIPYLVFLFT CGIPVFLLET ALGQYTSQGG VTAWRKICPI FEGIGYASQM 120
  121 IVILLNVYYI IVLAWALFYL FSSFTIDLPW GGCYHEWNTE HCMEFQKTNG SLNGTSENAT 180
  181 SPVIEFWERR VLKISDGIQH LGALRWELAL CLLLAWVICY FCIWKGVKST GKVVYFTATF 240
  241 PYLMLVVLLI RGVTLPGAAQ GIQFYLYPNL TRLWDPQVWM DAGTQIFFSF AICLGCLTAL 300
  301 GSYNKYHNNC YRDCIALCFL NSGTSFVAGF AIFSILGFMS QEQGVPISEV AESGPGLAFI 360
  361 AYPRAVVMLP FSPLWACCFF FMVVLLGLDS QFVCVESLVT ALVDMYPHVF RKKNRREVLI 420
  421 LGVSVVSFLV GLIMLTEGGM YVFQLFDYYA ASGMCLLFVA IFESLCVAWV YGAKRFYDNI 480
  481 EDMIGYRPWP LIKYCWLFLT PAVCTATFLF SLIKYTPLTY NKKYTYPWWG DALGWLLALS 540
  541 SMVCIPAWSL YRLGTLKGPF RERIRQLMCP AEDLPQRNPA GPSAPATPRT SLLRLTELES 600
  601 HC