YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9955954
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	35	0.66
Transmembrane Helix	36	57	0.90
Cytoplasmic	58	74	0.62
Transmembrane Helix	75	94	0.90
Non-Cytoplasmic	95	99	0.64
Transmembrane Helix	100	124	0.90
Cytoplasmic	125	133	0.60
Transmembrane Helix	134	155	0.88
Non-Cytoplasmic	156	172	0.61
Transmembrane Helix	173	192	0.85
Cytoplasmic	193	315	0.88
Transmembrane Helix	316	335	0.84
Non-Cytoplasmic	336	363	0.86
Transmembrane Helix	364	386	0.88
Cytoplasmic	387	436	0.95
Transmembrane Helix	437	459	0.87
Non-Cytoplasmic	460	465	0.76
Transmembrane Helix	466	485	0.94
Cytoplasmic	486	546	0.96
Transmembrane Helix	547	569	0.91
Non-Cytoplasmic	570	590	0.74
Transmembrane Helix	591	611	0.79
Cytoplasmic	612	853	0.99
Transmembrane Helix	854	875	0.93
Non-Cytoplasmic	876	911	0.92
Transmembrane Helix	912	935	0.84
Cytoplasmic	936	980	0.94
Transmembrane Helix	981	1014	0.78
Non-Cytoplasmic	1015	1082	0.61
Transmembrane Helix	1083	1105	0.74
Cytoplasmic	1106	1111	0.39
Transmembrane Helix	1112	1132	0.56
Non-Cytoplasmic	1133	1416	0.70

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALRGFCSAD GSDPLWDWNV TWNTSNPDFT KCFQNTVLVW VPCFYLWACF PFYFLYLSRH  60
   61 DRGYIQMTPL NKTKTALGFL LWIVCWADLF YSFWERSRGI FLAPVFLVSP TLLGITTLLA 120
  121 TFLIQLERRK GVQSSGIMLT FWLVALVCAL AILRSKIMTA LKEDAQVDLF RDITFYVYFS 180
  181 LLLIQLVLSC FSDRSPLFSE TIHDPNPCPE SSASFLSRIT FWWITGLIVR GYRQPLEGSD 240
  241 LWSLNKEDTS EQVVPVLVKN WKKECAKTRK QPVKVVYSSK DPAQPKESSK VDANEEVEAL 300
  301 IVKSPQKEWN PSLFKVLYKT FGPYFLMSFF FKAIHDLMMF SGPQILKLLI KFVNDTKAPD 360
  361 WQGYFYTVLL FVTACLQTLV LHQYFHICFV SGMRIKTAVI GAVYRKALVI TNSARKSSTV 420
  421 GEIVNLMSVD AQRFMDLATY INMIWSAPLQ VILALYLLWL NLGPSVLAGV AVMVLMVPVN 480
  481 AVMAMKTKTY QVAHMKSKDN RIKLMNEILN GIKVLKLYAW ELAFKDKVLA IRQEELKVLK 540
  541 KSAYLSAVGT FTWVCTPFLV ALCTFAVYVT IDENNILDAQ TAFVSLALFN ILRFPLNILP 600
  601 MVISSIVQAS VSLKRLRIFL SHEELEPDSI ERRPVKDGGG TNSITVRNAT FTWARSDPPT 660
  661 LNGITFSIPE GALVAVVGQV GCGKSSLLSA LLAEMDKVEG HVAIKTRILV THSMSYLPQV 720
  721 DVIIVMSGGK ISEMGSYQEL LARDGAFAEF LRTYASTEQE QDAEENGVTG VSGPGKEAKQ 780
  781 MENGMLVTDS AGKQLQRQLS SSSSYSGDIS RHHNSTAELQ KAEAKKEETW KLMEADKAQT 840
  841 GQVKLSVYWD YMKAIGLFIS FLSIFLFMCN HVSALASNYW LSLWTDDPIV NGTQEHTKVR 900
  901 LSVYGALGIS QGIAVFGYSM AVSIGGILAS RCLHVDLLHS ILRSPMSFFE RTPSGNLVNR 960
  961 FSKELDTVDS MIPEVIKMFM GSLFNVIGAC IVILLATPIA AIIIPPLGLI YFFVQRFYVA1020
 1021 SSRQLKRLES VSRSPVYSHF NETLLGVSVI RAFEEQERFI HQSDLKVDEN QKAYYPSIVA1080
 1081 NRWLAVRLEC VGNCIVLFAA LFAVISRHSL SAGLVGLSVS YSLQVTTYLN WLVRMSSEME1140
 1141 TNIVAVERLK EYSETEKEAP WQIQETAPPS SWPQVGRVEF RNYCLRYRED LDFVLRHINV1200
 1201 TINGGEKVGI VGRTGAGKSS LTLGLFRINE SAEGEIIIDG INIAKIGLHD LRFKITIIPQ1260
 1261 DPVLFSGSLR MNLDPFSQYS DEEVWTSLEL AHLKDFVSAL PDKLDHECAE GGENLSVGQR1320
 1321 QLVCLARALL RKTKILVLDE ATAAVDLETD DLIQSTIRTQ FEDCTVLTIA HRLNTIMDYT1380
 1381 RVIVLDKGEI QEYGAPSDLL QQRGLFYSMA KDAGLV