YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SLC30A4
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGSGAWKRL KSMLRKDDAP LFLNDTSAFD FSDEAGDEGL SRFNKLRVVV ADDGSEAPER  60
   61 PVNGAHPTLQ ADDDSLLDQD LPLTNSQLSL KVDSCDNCSK QREILKQRKV KARLTIAAVL 120
  121 YLLFMIGELV GGYIANSLAI MTDALHMLTD LSAIILTLLA LWLSSKSPTK RFTFGFHRLE 180
  181 VLSAMISVLL VYILMGFLLY EAVQRTIHMN YEINGDIMLI TAAVGVAVNV IMGFLLNQSG 240
  241 HRHSHSHSLP SNSPTRGSGC ERNHGQDSLA VRAAFVHALG DLVQSVGVLI AAYIIRFKPE 300
  301 YKIADPICTY VFSLLVAFTT FRIIWDTVVI ILEGVPSHLN VDYIKEALMK IEDVYSVEDL 360
  361 NIWSLTSGKS TAIVHIQLIP GSSSKWEEVQ SKANHLLLNT FGMYRCTIQL QSYRQEVDRT 420
  421 CANCQSSSP

Type	Start	End	Confidence
Cytoplasmic	1	113	0.99
Transmembrane Helix	114	135	0.91
Non-Cytoplasmic	136	143	0.81
Transmembrane Helix	144	164	0.92
Cytoplasmic	165	180	0.80
Transmembrane Helix	181	200	0.91
Non-Cytoplasmic	201	216	0.88
Transmembrane Helix	217	237	0.94
Cytoplasmic	238	274	0.94
Transmembrane Helix	275	295	0.65
Non-Cytoplasmic	296	302	0.59
Transmembrane Helix	303	325	0.68
Cytoplasmic	326	429	0.77