YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|157928480, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPKAAKGAK PEPAPAPPPP GAKPEEDKKD GKEPSDKPQK AVQDHKEPSD KPQKAVQPKH  60
   61 EVGTRRGCRR YRWELKDSNK EFWLLGHAEI KIRSLGCLIA AMILLSSLTV HPILRLIITM 120
  121 EISFFSFFIL LYSFAIHRYI PFILWPISDL FNDLIACAFL VGAVVFAVRS RRSMNLHYLL 180
  181 AVILIGAAGV FAFIDVCLQR NHFRGKKAKK HMLVPPPGKE KGPQQGKGPE PAKPPEPGKP 240
  241 PGPAKGKK

Type	Start	End	Confidence
Cytoplasmic	1	91	0.95
Transmembrane Helix	92	114	0.83
Non-Cytoplasmic	115	116	0.68
Transmembrane Helix	117	140	0.81
Cytoplasmic	141	149	0.74
Transmembrane Helix	150	168	0.96
Non-Cytoplasmic	169	175	0.76
Transmembrane Helix	176	198	0.92
Cytoplasmic	199	248	0.90