YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3603230
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQRLLFPPLR ALKGRQYLPL LAPRAAPKAQ CDCIRRPLRP GQYSTISEVA LQSGRGTVSL  60
   61 PSKAAERVVG RWLLVCSGTV AGAVILGGVT RLTESGLSMV DWHLIKEMKP PTSQEEWEAE 120
  121 FQRYQQFPEF KILNHDMTLT EFKFIWYMEY SHRMWGRLVG LVYILPAAYF WRKGWLSRGM 180
  181 KGRVLALCGL VCFQGLLGWY MVKSGLEEKS DSHDIPRVSQ YRLAAHLGSA LVLYCASLWT 240
  241 SLSLLLPPHK LPETHQLLQL RRFAHGTAGL VFLTALSGAF VAGLDAGLVY NSFPKMGESW 300
  301 IPEDLFTFSP ILRNVFENPT MVQFDHRILG ITSVTAITVL YFLSRRIPLP RRTKMAAVTL 360
  361 LALAYTQVGL GISTLLMYVP TPLAATHQSG SLALLTGALW LMNELRRVPK

Type	Start	End	Confidence
Cytoplasmic	1	68	0.99
Transmembrane Helix	69	92	0.89
Non-Cytoplasmic	93	153	0.98
Transmembrane Helix	154	172	0.95
Cytoplasmic	173	181	0.85
Transmembrane Helix	182	202	0.92
Non-Cytoplasmic	203	222	0.96
Transmembrane Helix	223	246	0.89
Cytoplasmic	247	262	0.95
Transmembrane Helix	263	284	0.90
Non-Cytoplasmic	285	325	0.91
Transmembrane Helix	326	344	0.95
Cytoplasmic	345	355	0.86
Transmembrane Helix	356	377	0.93
Non-Cytoplasmic	378	383	0.80
Transmembrane Helix	384	403	0.93
Cytoplasmic	404	410	0.92