YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COX10
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	162	0.96
Transmembrane Helix	163	182	0.85
Non-Cytoplasmic	183	188	0.73
Transmembrane Helix	189	210	0.87
Cytoplasmic	211	230	0.88
Transmembrane Helix	231	250	0.95
Non-Cytoplasmic	251	257	0.64
Transmembrane Helix	258	274	0.91
Cytoplasmic	275	281	0.71
Transmembrane Helix	282	303	0.84
Non-Cytoplasmic	304	308	0.71
Transmembrane Helix	309	331	0.79
Cytoplasmic	332	355	0.82
Transmembrane Helix	356	374	0.87
Non-Cytoplasmic	375	380	0.68
Transmembrane Helix	381	401	0.90
Cytoplasmic	402	410	0.90
Transmembrane Helix	411	429	0.86
Non-Cytoplasmic	430	443	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASPHTLSS RLLTGCVGGS VWYLERRTIQ DSPHKFLHLL RNVNKQWITF QHFSFLKRMY  60
   61 VTQLNRSHNQ QVRPKPEPVA SPFLEKTSSG QAKAEIYEMR PLSPPSLSLS RKPNEKELIE 120
  121 LEPDSVIEDS IDVGKETKEE KRWKEMKLQV YDLPGILAQL SKIKLTALVV STTAAGFALA 180
  181 PGPFDWPCFL LTSVGTGLAS CAANSINQFF EVPFDSNMNR TKNRPLVRGQ ISPLLAVSFA 240
  241 TCCAVPGVAI LTLGVNPLTG ALGLFNIFLY TCCYTPLKRI SIANTWVGAV VGAIPPVMGW 300
  301 TAATGSLDAG AFLLGGILYS WQFPHFNALS WGLREDYSRG GYCMMSVTHP GLCRRVALRH 360
  361 CLALLVLSAA APVLDITTWT FPIMALPINA YISYLGFRFY VDADRRSSRR LFFCSLWHLP 420
  421 LLLLLMLTCK RPSGGGDAGP PPS