YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: IPI:IPI00234002....
Protein type: Transmembrane
Type Confidence: 0.85
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKQCTDSYI PCATLFNPGL GVFLAFHQYS KRSPSSGSAA SCPGGSLMVA LTSWGNTAVV  60
   61 WACKMLQLQS RRLQVPAIVT AVSIAEAVAV AREIQGHHQW SDQIKQQQAE VHPPEKPGAL 120
  121 ICNSRQGELR ALVLQIVRPY PNSSNIPFKE QILNTDRLRV MGSRYFTSNR VMALNRNKQE 180
  181 CTFSDRQKAH ASQDCFHQAM QKHSGRSPGT PQFESQAAQA AHAVRSGTWE RVPLCLRLGE 240
  241 AFSDQWGTRR STSGGLNQVA MNPTNTPNVF DAKCLIGCRF DDAVVQSDMK HWPFMVVNDA 300
  301 VRLKVQVEYK GETKSFYPEE VPSMVLTKMK EIAEADLGKI VTNAVVTVSA YFNDCQCQAT 360
  361 KDAGTIAGLN VLRIINEPTA AAIAYGLDKK VGAERNVLIF DLGDDTFNVS ILTTEDGIFE 420
  421 VKSRAGDTHF TLASIEIDSL YEGINFYTSI THARFEEKNA DLFHGTLDPI EKALRDAKLE 480
  481 KSQIHDIVLI GDLFNRKELN KSINPDEAIA YGAAVQAAIL SGDKSENVQD LLLLDVTLLS 540
  541 LRIEAADGVM TVLIKRNTTI PTKQTQNFTT YSDNQPGVLI QVYEGVPQVE VTFDIDANVI 600
  601 LNVSAVDKST GKENKITITN DKRRLSKEDI ERMAQEAEKY KAEDEKQRGK VSS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle