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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15020653
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.70
Topology Confidence: 0.71
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSWLRITAMA PPYVATIVFT SQGAQPLVWV KDPLQLTSNP LGPPEPWSSR SSHLPWESPH  60
   61 APAPPAAPGD FDYLGPSASS QMSALPQEPT ENLAPFLKEL DSAGELPLGP EPFLAAHQDL 120
  121 NDKRTPEERL PEVVPLLNRD QNQALVQLPR LKWVQTTDLD RAAGHQADEI LVPLDSKVSR 180
  181 PTKFVVSPKN LKKDLAERWS LPEIVGIPHQ LSKPQRQKQT LPDDYLSMDT LYPGSLPPEL 240
  241 RVNADEPPGP PEQVGLSQFH LEPKSQNPET LEDIQSSSLQ EEAPAQLLQL PQEVEPSTQQ 300
  301 EAPALPPESS MESLAQTPLN HEVTVQPPGE DQAHYNLPKF TVKPADVEVT MTSEPKNETE 360
  361 STQAQQEAPI QPPEEAEPSS TALRTTDPPP EHPEVTLPPS DKGQAQHSHL TEATVQPLDL 420
  421 ELSITTEPTT EVKPSPTTEE TSAQPPDPGL AITPEPTTEI GHSTALEKTR APHPDQVQTL 480
  481 HRSLTEVTGP PTKLESSQDS LVQSETAPEE QKASTSTNIC ELCTCGDETL SCVGLSPKQR 540
  541 LRQVPVPEPD TYNGIFTTLN FQGNYISYLD GNVWKAYSWT EKLILSENYL TELPKDSFEG 600
  601 LLSLQYLDLS CNKIRYIERH TFESLPFLQY INLGCNLITE LSLGTFQAWH GMQFLHNLIL 660
  661 NRNPLTTVED PYLFELPALK YLDMGTTHIT LTTLKNILTM TVELEKLILP SHMACCLCQF 720
  721 KNSIEAVCKT VKLHCNTACL TNSIHCPEEA SVGNPEGAFM KMLQARKQHM STQLTIESEA 780
  781 PSDSSGINLS GFGGDQLEIQ LTEQLRSLIP NEDVRKFMSH VIRTLKMECS ETHVQGSCAK 840
  841 LMLRTGLLMK LLSEQQEAKA LNVEWDTDQQ KTNYINENME QNEQKEQKSS ELMKEVPGDD 900
  901 YKNKLIFAIS VTVILIILII IFCLIEVNSH KRASEKYKDN PSISGA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle