YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPR17_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGLETALPS LTDNASLAYS EQCGQETPLE NMLFACFYLL DFILAFVGNA LALWLFIWDH  60
   61 KSGTPANVFL MHLAVADLSC VLVLPTRLVY HFSGNHWPFG EIPCRLTGFL FYLNMYASIY 120
  121 FLTCISADRF LAIVHPVKSL KLRRPLYAHL ACAFLWIVVA VAMAPLLVSP QTVQTNHTVV 180
  181 CLQLYREKAS HHALASLAVA FTFPFITTVT CYLLIIRSLR QGPRIEKHLK NKAVRMIAMV 240
  241 LAIFLICFVP YHIHRSVYVL HYRGGGTSCS AQRALALGNR ITSCLTSLNG ALDPVMYFFV 300
  301 AEKFRHALCN LLCSKRLTGP PPSFEGKTNE SSLSARSEL

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.93
Transmembrane Helix	37	58	0.94
Cytoplasmic	59	67	0.90
Transmembrane Helix	68	89	0.92
Non-Cytoplasmic	90	108	0.87
Transmembrane Helix	109	132	0.78
Cytoplasmic	133	145	0.90
Transmembrane Helix	146	168	0.93
Non-Cytoplasmic	169	192	0.95
Transmembrane Helix	193	216	0.91
Cytoplasmic	217	232	0.96
Transmembrane Helix	233	254	0.91
Non-Cytoplasmic	255	339	0.78