YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	tr\|D3ZGP2\|D3ZGP2...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.93
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAHVGDCKWM SWLPVLVVSL MCSAKAEDSN CGENEYHNQT TGLCQQCPPC RPGEEPYMSC  60
   61 GYGTKDEDYG CVPCPAEKFS KGGYQICRRH KDCEGFFRAT VLTPGDMEND AECGPCLPGY 120
  121 YMLENRPRNI YGMVCYSCLL APPNTKECVG ATSGVSAHSS STSGGSTLSP FQHAHKELSS 180
  181 QGHLATALII AMSTIFIMAI AIVLIIMFYI MKTKPSAPAC CSSPPGKSAE APANTHEEKK 240
  241 EAPDSVVTFP ENGEFQKLTA TPTKTPKSEN DASSENEQLL SRSVDSDEEP APDKQGSPEL 300
  301 CLLSLVHLAR EKSVASNKSA GIQSRRKKIL DVYANVCGVV EGLSPTELPF DCLEKTSRML 360
  361 SSTYNSEKAV VKTWRHLAES FGLKRDEIGG MTDGMQLFDR ISTAGYSIPE LLTKLVQIER 420
  421 LDAVESLCAD ILEWAGVVPP ASPPPAAS

Type	Start	End	Confidence
Signal Peptide	1	26	0.92
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	186	0.96
Transmembrane Helix	187	209	0.93
Cytoplasmic	210	448	0.96