YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IPI:IPI00365229....
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.65
Transmembrane Helix	7	28	0.68
Non-Cytoplasmic	29	428	0.97
Transmembrane Helix	429	450	0.90
Cytoplasmic	451	458	0.90
Transmembrane Helix	459	482	0.87
Non-Cytoplasmic	483	497	0.85
Transmembrane Helix	498	519	0.94
Cytoplasmic	520	643	0.69
Transmembrane Helix	644	665	0.75
Non-Cytoplasmic	666	688	0.92
Transmembrane Helix	689	707	0.95
Cytoplasmic	708	716	0.75
Transmembrane Helix	717	738	0.91
Non-Cytoplasmic	739	753	0.80
Transmembrane Helix	754	773	0.82
Cytoplasmic	774	785	0.82
Transmembrane Helix	786	804	0.85
Non-Cytoplasmic	805	877	0.55
Transmembrane Helix	878	900	0.88
Cytoplasmic	901	913	0.81
Transmembrane Helix	914	933	0.94
Non-Cytoplasmic	934	951	0.78
Transmembrane Helix	952	971	0.91
Cytoplasmic	972	978	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLGSGAFAA SCVAIEVIGV AIFIRGFFPA PVRSSARPEH GAETPAPEPV AGVSSNWTKL  60
   61 PPPLFSKVVI MLIDALRDDF VFGSKGVKYM PYTTYLVEKG ASHSFVAEAK PPTVTMPRIK 120
  121 ALMTGSLPGF VDVIRNLNSP VLLEDNVIRQ AKAAGKRIIF YGDETWVKLF PKHFVEYDGT 180
  181 TSFFVSDYIE VDNNVTRHLD KVLRRGDWDV LILHYLGLDH IGHISGPNSP LIGHKLSEMD 240
  241 SVLMKIHTSL LSKDRETLLP SLLVLCGDHG MSETGSHGAS STEEVSTPLL LISSAFERKP 300
  301 GDVRHPKHVQ QTDLAATLAI GLGLPIPKDN VGSLLFPVIE GKQMREQLRF LHLNTLQLSK 360
  361 LLQENIPAYE KDPGFEQFKM AERLHGNWVK LHLEENHSDI LLGLGTKVLR QYLGALKTLS 420
  421 QSLSTQVAHY DIYSMAVLTL FLLSTPHVLC RKAELDVPLL SPVFSLLFYL IFLVLSAIHV 480
  481 LVCTSSESSC YLCNLPWLAA GAVMVLVSAL FCAILSALIR MVTDGTLLRK NATVASSGWS 540
  541 EVNLLLLLGT VGHVLSLGAS SFVEEEHQTW YFLINTLCLA LSQETCRSYF LGDDCEPQHH 600
  601 FQVEQKCVNV LACTLQDSTS CSTPESESDT AGKRASLLEA HRSCKWWTVL ASPWLVLICC 660
  661 RLLRSLNQTG VQGAHRPDFS HWLTSSDHKV HLSGLAALSL VVIFILVQKG CSLVSKVALA 720
  721 LGLLGVFCYR AAIGIVLFPW QPDNKGISKG ITEARFVYVF VLGILFTGTK DLLKAQVIAA 780
  781 DFKTKIVGLW EIHSGLVLLA ALLLRPHNLP VLAFSLLIQT VMTKFIWKPL RHDAAEVTVM 840
  841 HYWFGQAFFY FQGNSNNIAT IDISAGCVGL ETYMEVPATF LTVFGTYVGP VLWASHLVYF 900
  901 LSSEGNNGSA LSRACFCYAL ICSVPVATYI VLVTSLRYHL FIWSVFSPKL LYEGMHLLIT 960
  961 AAICAVFTAT NQTRHSRA