YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S23A2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.88
Transmembrane Helix	105	124	0.81
Non-Cytoplasmic	125	134	0.71
Transmembrane Helix	135	157	0.82
Cytoplasmic	158	213	0.54
Transmembrane Helix	214	248	0.68
Non-Cytoplasmic	249	265	0.58
Transmembrane Helix	266	286	0.91
Cytoplasmic	287	306	0.92
Transmembrane Helix	307	329	0.92
Non-Cytoplasmic	330	366	0.94
Transmembrane Helix	367	389	0.86
Cytoplasmic	390	454	0.93
Transmembrane Helix	455	475	0.93
Non-Cytoplasmic	476	482	0.76
Transmembrane Helix	483	505	0.91
Cytoplasmic	506	512	0.85
Transmembrane Helix	513	531	0.95
Non-Cytoplasmic	532	548	0.82
Transmembrane Helix	549	569	0.89
Cytoplasmic	570	647	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMGVGKNTSK SVEVGGSTEG KYEEEAKRPD FFTLPVVING GATSSGEQDN EDTELMAIYT  60
   61 TENGIAEKSS LAETLDSTGS LDPQRSDMIY TIEDVPPWYL CIFLGLQHYL TCFSGTIAVP 120
  121 FLLADAMCVG DDQWATSQLI GTIFFCVGIT TLLQTTFGCR LPLFQASAFA FLAPARAILS 180
  181 LDKWKCNTTE ITVANGTAEL LEHIWHPRIQ EIQGAIIMSS LIEVVIGLLG LPGALLRYIG 240
  241 PLTITPTVAL IGLSGFQAAG ERAGKHWGIA MLTIFLVLLF SQYARNVKFP LPIYKSKKGW 300
  301 TAYKLQLFKM FPIILAILVS WLLCFIFTVT DVFPSNSTDY GYYARTDARK GVLLVAPWFK 360
  361 VPYPFQWGMP TVSAAGVIGM LSAVVASIIE SIGDYYACAR LSCAPPPPIH AINRGIFVEG 420
  421 LSCVLDGVFG TGNGSTSSSP NIGVLGITKV GSRRVIQYGA ALMLGLGMIG KFSALFASLP 480
  481 DPVLGALFCT LFGMITAVGL SNLQFIDLNS SRNLFVLGFS IFFGLVLPSY LRQNPLVTGI 540
  541 TGIDQVLNVL LTTAMFVGGC VAFILDNTIP GTPEERGIKK WKKGVSKGNK SLDGMESYNL 600
  601 PFGMNIIKKY RCFSYLPISP TFAGYTWKGF GKSENRRSSD KDSQATV