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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRPC2_RAT
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLMSLTDSKE GKNRSGVRMF KDDDFLIPAS GESWDRLRLT CSQPFTRHQS FGLAFLRVRS  60
   61 SLDSLSDPVK DPSSPGSSGL NQNSSDKLES DPSPWLTNPS IRRTFFPDPQ TSTKEISALK 120
  121 GMLKQLQPGP LGRAARMVLS AAHKAPPASV VSPNNSHGEP DSSHPERAEP RAEEPNRKNN 180
  181 ASRGKRRKVQ EQRRPLSSSS SQPNRRATGR TKQRQQRPQA KSDGSGVQAT GQCPICTGSF 240
  241 SIEALPRHAA TCGESSPPQP ASPTSLSSSE SVLRCLHVAL TPVPLIPKPN WTEIVNKKLK 300
  301 FPPTLLRAIQ EGQLGLVQQL LESGSDPSGA GPGGPLRNVE ESEDRSWREA LNLAIRLGHE 360
  361 VITDVLLANV KFDFRQIHEA LLVAVDTNQP AVVRRLLARL EREKGRKVDT KSFSLAFFDS 420
  421 SIDGSRFAPG VTPLTLACQK DLYEIAQLLM DQGHTIARPH PVSCACLECS NARRYDLLKF 480
  481 SLSRINTYRG IASRAHLSLA SEDAMLAAFQ LSRELRRLAR KEPEFKPQYI ALESLCQDYG 540
  541 FELLGMCRNQ SEVTAVLNDL GEDSETEPEA EGLGQAFEEG IPNLARLRLA VNYNQKQFVA 600
  601 HPICQQVLSS IWCGNLAGWR GSTTIWKLFV AFLIFLTMPF LCIGYWLAPK SRLGRLLKIP 660
  661 VLKFLLHSAS YLWFLIFLLG ESLVMETQLS TFKGRSQSVW ETSLHMIWVT GFLWFECKEV 720
  721 WIEGLRSYLL DWWNFLDVVI LSLYLASFAL RLLLAGLAYM HCRDASDSST CRYFTTAERS 780
  781 EWRTEDPQFL AEVLFAVTSM LSFTRLAYIL PAHESLGTLQ ISIGKMIDDM IRFMFILMII 840
  841 LTAFLCGLNN IYVPYQETEK LGNFNETFQF LFWTMFGMEE HSVVDMPQFL VPEFVGRAMY 900
  901 GIFTIVMVIV LLNMLIAMIT NSFQKIEDDA DVEWKFARSK LYLSYFREGL TLPVPFNILP 960
  961 SPKAAFYLLR RIFRFICCGS SCCKAKKSDY PPIPTFTNPG ARAGPGEGEH VSYRLRVIKA1020
 1021 LVQRYIETAR REFEETRRKD LGNRLTELTK TVSRLQSEVA SVQKTVAAGG ALRPPDGASI1080
 1081 LSRYITRVRN SFQNLGPPAP DTPAELTMPG IVETEVSLED SLDATGEAGT PASGESSSSS1140
 1141 SAHVLVHREQ EAEGAGDLPL GEDLETKGES 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle