YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149068895
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPAVDRKGY WGPTTSTLDW CEENYVVTLF VAEFWNTVSN LIMIIPPIFG AIQGFRDRLE  60
   61 KRYIAAYVAL TVVGMGSWCF HMTLKYEMQL LDELPMIYSC CIFVYCMFEC FKTKSSINYH 120
  121 LLFTLVLFSL IVTTIYLKVK EPIFHQVMYG MLVFALVLRS IYIVTWVYPW LRGLGYTSLT 180
  181 VFLLGFLLWN VDNIFCDSLR NFRKTVPPVL GVATQFHAWW HILTGLGSYL HILFSLYTRT 240
  241 LYLRYRPKVK FLFGIWPMVM FEPQRKH

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.71
Transmembrane Helix	34	55	0.67
Cytoplasmic	56	62	0.93
Transmembrane Helix	63	84	0.92
Non-Cytoplasmic	85	93	0.73
Transmembrane Helix	94	111	0.87
Cytoplasmic	112	116	0.87
Transmembrane Helix	117	137	0.92
Non-Cytoplasmic	138	142	0.81
Transmembrane Helix	143	163	0.89
Cytoplasmic	164	172	0.64
Transmembrane Helix	173	191	0.90
Non-Cytoplasmic	192	216	0.92
Transmembrane Helix	217	238	0.91
Cytoplasmic	239	267	0.89